RNA id: TCONS_00039775


Basic Information

Item Value
RNA id TCONS_00039775
length 3712
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_019938
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1249788 ~ 1267820 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcccaacgtacgTCCTgttatgcatttttaatttctacagctGCGAAAATCTGAAAACAGCCACATATTGATCAATAATGTTGTGAAAGTTAGTTTgaaattaagttatgattgaattacctcttgttagtgatgaaatagtttgataacaagcaggaaatgttcatgggtcaatgacatcaccacattgaaatggtctatattgaTTATAATAgttgttttttacagtaaaagcAGATATAATTTGAGCTGATAGTATAAAACACTTCATAATTAGTTTACCTTAAATCAAAAGACAGTTTTAAGTGAACTATGTGTTAATTAGAAGAAATATAGGATTTTAATCTTTGCAGATCTGCCCCTCCTCCTTCAGTGATGCCCCTCCCCCTTAAATGAAGCTCCTCCCTCTTCAGTTCAGCTATAAATACTGGAGTATTCCCATCAGTCTACAAGTGAAGACGAGCATCAGAGCATCAGGAAGAGGTGATATTTGAAGGACAgagagaagatgagtgatccagaaccctgcagaactGAAGAGGAAGAGGCTGAAGAGCAAACAGACTTTACTGAAGAGAATGAGGCGAATGATGATGACGGACTTGTAAAAGGCGAGAAAATCCCTCATTTATTGACTGAAGATGCTTTTGTAATGAAAAGGGAGAAGAAATgcttcacctgcactcagtgtggaataaGTTTTGGATACAAAAAAACTCTCCAGcttcacatgaggattcacactggagagaaaccgtacacatgcgctcagtgtgggaagagtttcagacattTATCAAGCTTTAATCGACACAagctgatccacactggagagaaaacacacgcATGTGATCAATGCGGCAAGACATTTTTGAGGGCTTCACAGCTGGAGATCCATCTGAGAGTTCACACTAAAGAGAAACCGTATTCATGctctgagtgtgggaagagttttagacaCCAGTCAAGTTTAAAAGaccatcagaagatccacactggagtgaAAGAGCACATGTGCTTTGAGTGTCAGAAGACTTTTGTTACAGATGGGGTGTTAAAACaacaccagaggattcacactggagagaaaccatacgtgtgttcacactgcgacaagagattcagacAGTTATCAAACCTGAAAGCACATGAGAGgagtcacactggagagaaaccgtacaagtgtgaTCAGTGTCTGAAGAGTTACACACGGTGGTCGCATCTTAAGacacacatgaaaatccacaccgGATAAAAGCAGCACACGTGACATCAACATAAGCAAAGCATTCTCTCATGTGTTGCGGGTGTGACCATCAGAAAATACTGGAGATTAGGTGTGGAAAGTAAATCCATCCGTCTCCAGTTGTTGCTTGTTCATCTCTTTCCATGATTACTACGTTTACCTAATAggcatttcatacacagtggcaattcaaagtgctttacataaacaggaataaaagaagcaagaataaaaacaaataataaaaatgattagataaaatgtgttaaaaaagaatgaagagaaagacataatagtgcgatctgctggacgcagcacagtgctcattcagtaaaggcacagctaaacagatgtgtttcagtcttgatgtgaatgtgcctaatgttggagcacatctgatcatttctggaagctgattccagcagccgggggcgctgttagtagctaAAAGCTGATTCCCCTTGCTTTGACTGAACTtatggaacttctagtttatatgatcctagagatctgagtgatctgttgggtttgtattcagtgagcatatctgtgatgtattgtgCTCTAGGCCATATAGTGATTTATAgagcagtaataatactttaaactctattctggatgtaactgggagccagagtagagacctgaggacaggtgtgatgtgctctgacttcctggttctggtcagaatcctggccgcagcgttctggatgagctgcaactgtctgactgtgtttttgggaagaccagtgtggagtccattacagtaatccaccctgctgctgataaaagcatcaacaagtttctctaagtcttcactagaaacaaagcatctgattcctGCAATGTTTCTGAGataatagtatgctgatttactgactgctttgacatgactgttgaagcTCATGAAGGTCAGAATGTAAATGTACATATAACTTATTTCAGCAGACTTgcattaaaatgttcaaaattaAAACTCTTCTCCagtgtttacattaattaaatttgttGCCAAAAGGAATCCACACATCTCTGGATCACCTGTCATGTGTTCAGGTTGGCCTAGGTTAAATACAAGCAGATATTAACATTAATTGAAatacttccctgctgaaaaatccaacttaaaccagcctaggctggtttaagctggatttttcagcagggttaagtCAGTCACTGCattcaaatatataatttaatatttgccGCCATCAATTGGGCAGctaaattgtatgagtgtgtgtgtgtgtgtgtgttgatgtttcccagagatgggttgcggctggaagggtatccgctgagtaaaaacgtgctggataagttggcggttcattccgctgtggcgaccacagattaataaagagactaagcctaaaagaaaatgaatgaattctgtaGCTATATCAGACTTTAGCTCGGTTGTTTGGcactgtttttattaattaaaatatgactTTCGCCATCTTGTGTCTTTCCCCAGGAGACTGGATTATTTTCGCGCCAGTTAAGTGTGTACAGTAAAGCATCAGGTAGGGGACATTATTTACCCCTCTTCAGCTTTCTTATTGTTTTAGATTTACTTCATAAACAGATTGTAACACTGAAATACATATTTCATGATGTATTTGGTCAAAATAGTGAGGATTAGGCCGTATGAAAACCTTTAAAAACATACATCTACCCCACACGGTACCGACTCGTCTATGTTTTGGTCCTGCATATGTTCTGCCGTCATGACGACCGTCTCCCGCTTGTGACGGAAAAACAGCATTCGCTGAGTAACACAGGCAGCCAATCAGCACTCGTTGCGCAACAAAGGCAGCCAATCAGCGTTCGCTGAGCAACACAGGCAGCCAATCGGCGTTCGCTGAGCAACGTGCAGGCAAAATATCCCGCCCTCGGCGCTTATTATGAGGTGGAGAGAGAATTAATCGGAGCGTGTGTGTAATTCCACTAATGTTACTGgtgttttgtgttcatttaaagtAAGTGTTTTATTTGTGTCATCTGTAACGTTTGTGAGTGTGATATGCTTAGCTTTGCTGCCGTTTCTTGCGGTTTAATCTGCTTCGAGTCATGTAGACAATGCTAATATACTTAGCATCCGGTTAATATCTTATATTCATTCACAGTTGCTTATACTAATGTgatttatgtacattttattaaAGGACCGTGAGTAAATGAGGCATCCAGAAAAATCCTGCAAAGCTGGAGAGACTGAAGAATGAAAAGGTTGGTGTTTATTCCTGATTGTTCAATAATGAGGCTGAAGAACATTAATAACAAAgaagttttttttcattttgtgcgCTAAAGGAATTAAAATTCCACAGAAAAACAAATAGCCTGGTTCAGTTTTCAATTATTTCCATGTATGAAACATTTATTATCATAAGATTAAATGTCATTTGCTGTGATTTATTTTAGaactgatcttttttttaatctatttgctACTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157960

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042009 lncRNA upstream 54440 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039764 lncRNA upstream 182944 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00039763 lncRNA upstream 191235 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00042008 lncRNA upstream 310961 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042007 lncRNA upstream 432161 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042010 lncRNA downstream 54480 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA downstream 55189 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039787 lncRNA downstream 115059 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00041847 lncRNA downstream 397915 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 464778 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00039774 mRNA upstream 46383 1186866 ~ 1203405 (+) False XLOC_019937
TCONS_00039773 mRNA upstream 67623 1170295 ~ 1182165 (+) True XLOC_019936
TCONS_00039772 mRNA upstream 72150 1170294 ~ 1177638 (+) False XLOC_019936
TCONS_00039771 mRNA upstream 102799 1138017 ~ 1146989 (+) True XLOC_019935
TCONS_00039770 mRNA upstream 102818 1137997 ~ 1146970 (+) False XLOC_019935
TCONS_00039778 mRNA downstream 14408 1276680 ~ 1282346 (+) True XLOC_019939
TCONS_00039779 mRNA downstream 22910 1285182 ~ 1290139 (+) True XLOC_019940
TCONS_00039780 mRNA downstream 29379 1291651 ~ 1294899 (+) True XLOC_019941
TCONS_00039781 mRNA downstream 38315 1300587 ~ 1307143 (+) True XLOC_019942
TCONS_00039782 mRNA downstream 50774 1313046 ~ 1322968 (+) False XLOC_019943
TCONS_00039761 other upstream 210039 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 230636 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 442274 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039784 other downstream 61242 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039812 other downstream 314591 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 368414 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 387856 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 398143 1660415 ~ 1661346 (+) False XLOC_019971

Expression Profile

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