XLOC_019931 (camk1ga)


Basic Information

Item Value
gene id XLOC_019931
gene name camk1ga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1049367 ~ 1069407 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039762
CTGCAGAAGTCAGTTTTTGAATAACCTGAGCCACGATGGGTCGTAAGGAGATCAACTGCACATGGAAGAAGAGCACCAACAACATCAAGGAGATCTTTGACTTCAAGGAGGTTCTAGGCTCAGGCTCGTTTTCAGAGGTCTACCTGGTGCGGGAGAGGAAGAGCGGCAATTTCTACGCCCTGAAGTGTGTGAAGAAAAAACAGCTGCATCACTCCAACCTGGAGAACGAGATACAAGTGCTGAAGAGGATAAAGCACAGTAATGTCGTGGGTCTGGAGGATTTCTATGAAAGCAGAACGCATTATTACCTGGTGATGGAGCTggtGTCAGGAGGAGAGCTCTTTGACCGTATTCTGGATCGAGGCGTGTACACAGAGAAAGACGCCAGCCGTGTGATCAATCAGGTCCTGGAGGCCGTTTCCTACCTGCACCAGAACAGCATCGTCCACCGAGACCTGAAGccagAGAACCTGCTGTACTACAGTCCAGATGAAAATGCCAAGATCATGATCAGTGACTTCGGTTTGTCCAAGATGTCTGATCATGGTGTGATGTCCACCGCCTGCGGGACGCCGGGATATGTTGCGCCGGAGGTCCTGGCTCAGAAACCCTACAGTAAAGCTGTGGACTGCTGGTCAATCGGAGTCATCACCTACATTCTGTTGAGCGGATACCCGCCGTTCTATGAGGAAAACGAGACCCGTCTGTTCTCCAAAATCATGAAGGCAGAGTATGCGTTTCACTCGCCGTACTGGGACGACATCTCCGAGTCCGcGAAAGACTTTATCAGGCACATGTTGGAGAAAAACCCCAGCAAACGCTACACCACTGAACAAGCGCTCAGTCATCCATGGATTATTGGAGACACGGCGCACAACGACAACATCATTCACTCCGTCTGTGAGCAGATACAGAAGAACTTTGCCAAATCCAAGTGGAAGcgtgCCATCAATGCATCAGTGGCAGTCAGTCACATGCGCCGTCTGCAGCAGAGCCACACTGACCCCGCCCCGCCAGCCCCCACACCGCTTATACAGGTGCTGGACGTCTCCGCCCCCGGTCCACCCCCTGACCTGTTGGACACCAATGGGAACCCGTCCTGCAGTCACATGTCCCTGGCACCTCATGCTGATGTCAGGGGGCGTGGCCCGCTCAAGGCCTGCAATAGTGAGCCGATGCACGCGCTGGTGATCTGCGAGACGGGTCAACATGCATATCACTCTGAATCTGACCTGCCCTGTGCTGCTAGCAGgtCGGACAGAGTGACAGATGGGCGGGGCCTTTCTATGCAGACCGGAGTTTGCAGTGTGATGTAATGCTCTGagctgtgattgacagctgtcagTCAGATGAGGTGTGTGTTTCTCTCACGGCTGTGACTGAGTGCCAATCTCACACTGCGTCTGCGTCTCACATCCAGAGGAATTCAGGATCAGGCCGATCATTCTCATCCTCCGTCTGTTTTTTCCACATCCAGCAGTCGCCGAGCATCATGGGAAGGCGGATCACATGTGCCACTGTATTATTGAGAACGGCTGCGGGGTTTTATTCCTGAGGGGAGCCGGAGGACTGTGTTTAAAGAAGATTATTTTCGTATTTATCGCTCATATTGGAGGAGCTGCTCTCTGTATTTATCTTTTGTATCTGCAGATTTGGAGATCAGCTGACTGCTGGTTTAGGGATTTATAATGTGTGTATCACAGAGCGCTGATGTAAACAAACGCTAATGTGTGTctgtattaaacacatttcaataAAAGTATTTACACACCA
>TCONS_00039763
tttccTGGAAACTCACTCTgtatggatcatttgaatcagtgaatcatataCTGAAAACTTactctgaatagatcatttgaatcagtgaatcatttaccttAAAGTCACTCTCAGtgcatcatttgaatcagttaatCATTTGCTAGaaatcactctgaacagatcatttgaaacactgaatcattcattgattcttttattaattttccttcagcttagttccttagtccttatttatcaggggtcaccacagcggaatgaatcaccaactattccggcgtatgttttatgcagcagactAGAGTAGTGCAGTAAAAGCAGAGTGAAGCGTCCAGCACGGCTCCAGCATTCAGATCTGCACACACTCGGAGCACATTCAGAGATGTTTGTGTCTGACTTGAGGATCTCTTGTTTTCTCAGAGGCTCGTTTTCAGAGGTCTACCTGGTGCGGGAGAGGAAGAGCGGCAATTTCTACGCCCTGAAGTGTGTGAAGAAAAAACAGCTGCATCACTCCAACCTGGAGAACGAGATACAAGTGCTGAAGAGGATAAAGCACAGTAATGTCGTGGGTCTGGAGGATTTCTATGAAAGCAGAACGCATTATTACCTGGTGATGGAGCTggtGTCAGGAGGAGAGCTCTTTGACCGTATTCTGGATCGAGGCGTGTACACAGAGAAAGACGCCAGCCGTGTGATCAATCAGGTCCTGGAGGCCGTTTCCTACCTGCACCAGAACAGCATCGTCCACCGAGACCTGAAGGTGAGTAAGACTGATCCACTGCTGTGAGTTTGCATTGAGTTtaagggtgcgttcacacctgtaGTGTGCTTACTGTGATGC
>TCONS_00039764
CAAACTTGTGTTTTTGATTGAAGCCGCCAGACTGCTTGATAAAACATCAGCACAAGGTTTGCCAATTAGTCTCCTTATAAAATACAGTGTTTGTCGTTTCTCCTCAGCGCCGGAGGTCCTGGCTCAGAAACCCTACAGTAAAGCTGTGGACTGCTGGTCAATCGGAGTCATCACCTACATTCTGTTGAGCGGATACCCGCCGTTCTATGAGGAAAACGAGACCCGTCTGTTCTCCAAAATCATGAAGGCAGAGTATGCGTTTCACTCGCCGTACTGGGACGACATCTCCGAGTCCGcGAAAGACTTTATCAGGCACATGTTGGAGAAAAACCCCAGCAAACGCTACACCACTGAACAAGCGCTCAGTCATCCATGGATTATTGGAGACACGGCGCACAACGACAACATCATTCACTCCGTCTGTGAGCAGATACAGAAGAACTTTGCCAAATCCAAGTGGAAGcgtgCCATCAATGCATCAGTGGCAGTCAGTCACATGCGCCGTCTGCAGCAGAGCCACACTGACCCCGCCCCGCCAGCCCCCACACCGCTTATACAGGTGCTGGACGTCTCCGCCCCCGGTCCACCCCCTGACCTGTTGGACACCAATGGGAACCCGTCCTGCAGTCACATGTCCCTGGCACCTCATGCTGAT

Function

symbol description
camk1ga Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7594 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG).

Ensembl:

ensembl_id ENSDARG00000044526

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039762 False 1773 mRNA 0.51 12 1049367 1069407
TCONS_00039763 False 841 lncRNA 0.45 3 1055718 1058553
TCONS_00039764 True 655 lncRNA 0.53 5 1062851 1066844

Neighbor

gene id symbol gene type direction distance location
XLOC_019930 si:ch73-352p18.4 coding upstream 6611 1028724 ~ 1042756 (+)
XLOC_019929 pparda coding upstream 30215 997838 ~ 1019152 (+)
XLOC_019928 def6b coding upstream 52846 978867 ~ 996521 (+)
XLOC_019927 NA coding upstream 110540 923511 ~ 938827 (+)
XLOC_019926 stk38b coding upstream 150722 883678 ~ 898645 (+)
XLOC_019932 guca1e coding downstream 23072 1092479 ~ 1109547 (+)
XLOC_019933 si:ch1073-181h11.1 coding downstream 41448 1110855 ~ 1120875 (+)
XLOC_019934 si:ch1073-181h11.2 coding downstream 53703 1123110 ~ 1130263 (+)
XLOC_019935 GUCA1A coding downstream 68590 1137997 ~ 1146989 (+)
XLOC_019936 irf6 coding downstream 100887 1170294 ~ 1182165 (+)
XLOC_019924 NA non-coding upstream 231740 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 740163 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 762178 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 992627 53914 ~ 56740 (+)
XLOC_019938 CU570769.1 non-coding downstream 180381 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 247345 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 307924 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 507456 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 580721 1650128 ~ 1653938 (+)

Expression


Co-expression Network