XLOC_019928 (def6b)


Basic Information

Item Value
gene id XLOC_019928
gene name def6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 978867 ~ 996521 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039754
gtgtgtgtgatggcgcTCAGAGCTGCGCTGCTGAAGAGCATCTGGTACGCCTTCACTTCTCTGGACACCGAAGACAGCGGAAAAGTGTCCAAATCACAACTCAAGgttttgTCTCATAACCTTCACAGTGTGTTGCGGATCCCTCATGACCCCGCGGCCCTTGAGAGACACTTTAGCGATGATGACGACGGCCCCGTGTCCAGCCAGGGGTACATGCCCTACCTGAACCAGTTCATTCTGGACAAGgtgaCGGAGGGCACGTTTGTTAAAGAGGAGGTGGATGAGCTCTGCTGGACGCTGTGCTCCAAGAAGAACTACCACCCAGCCGATGATCAGCTCCTAACCAATCAGGACGCTTTGAGGCTGTGGTGTCTGTTCAACTTCCTGGCGGACGACCGATACCCGCTCACACTGGTGCCGGAGGAGgtgGAGTACCTGCTGCGTAAGCTCAGCGCTGTGCTGCCGGTGGAGCTGAGCTGTGTGGAGCTGGAGGAGTGTGTGTCGCAGGAGTGTGTGTCTCCGTCGcaggagtgtgtgagtgtgtggagtTTCCTGCATCTGGTGAACCGCAGCGCCGTCAGTCGAGGAGTCGACGCCGACAGCTTCAGTCTCGCTGTGGAGAAGGTGTACAGAGAGGTGGTGGGAAACGTGCTGAAGGAGGGTTACCTGTGGAAGAAGGGTCACCTGCGCAGGAACTGGACGGAGCGCTGGTTCTGTCTGAAGCCCGGCTCTTTCTCCTACTATGTGAGTGAGGACGCGCGGGACTGCAGGGGTGTGATAGAGATGGACCACAACTGCTGTGTGGAGGTGCTGCCAGATCGTGATGGAAAGAGGTGCATGTTCTGTGTAAAGACCCTCAACAAGACCTTCGAGATCAGCGCACCAGACTCCAGACAGAGACAAGAGTGGATCACAGccaTACACACAGCTCTGCGTCTGTCCTCATCAGGCCGCTGGTCCTTGCATGAGGAGCTGAAGTGTATCCGGCGGGAGCAGCGGGCGGAG
>TCONS_00039755
gttttgTCTCATAACCTTCACAGTGTGTTGCGGATCCCTCATGACCCCGCGGCCCTTGAGAGACACTTTAGCGATGATGACGACGGCCCCGTGTCCAGCCAGGGGTACATGCCCTACCTGAACCAGTTCATTCTGGACAAGgtgaCGGAGGGCACGTTTGTTAAAGAGGAGGTGGATGAGCTCTGCTGGACGCTGTGCTCCAAGAAGAACTACCACCCAGCCGATGATCAGCTCCTAACCAATCAGGACGCTTTGAGGCTGTGGTGTCTGTTCAACTTCCTGGCGGACGACCGATACCCGCTCACACTGGTGCCGGAGGAGgtgGAGTACCTGCTGCGTAAGCTCAGCGCTGTGCTGCCGGTGGAGCTGAGCTGTGTGGAGCTGGAGGAGTGTGTGTCGCAGGAGTGTGTGTCTCCGTCGcaggagtgtgtgagtgtgtggagtTTCCTGCATCTGGTGAACCGCAGCGCCGTCAGTCGAGGAGTCGACGCCGACAGCTTCAGTCTCGCTGTGGAGAAGGTGTACAGAGAGGTGGTGGGAAACGTGCTGAAGGAGGTGCGCTggagtgctgtgtgtgtgtgtgtgtgaatgtgacgtgtgtgcatgtctgtatgtgggtgtgttgtgtgtatctgtgtgtatctgtgtgtatgttttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgcacgTGCAGGGTTACCTGTGGAAGAAGGGTCACCTGCGCAGGAACTGGACGGAGCGCTGGTTCTGTCTGAAGCCCGGCTCTTTCTCCTACTATGTGAGTGAGGACGCGCGGGACTGCAGGGGTGTGATAGAGATGGACCACAACTGCTGTGTGGAGGTGCTGCCAGATCGTGATGGAAAGAGGTGCATGTTCTGTGTAAAGACCCTCAACAAGACCTTCGAGATCAGCGCACCAGACTCCAGACAGAGACAAGAGTGGATCACAGccaTACACACAGCTCTGCGTCTGTCCTCATCAGGCCGCTGGTCCTTGCATGAGGAGCTGAAGTGTATCCGGCGGGAGCAGCGGGCGGAGCGGGAGCGTAGGCGTGTGCTGCGGGTGGAGGAGACGCGGAGGCTGAAGGAGCTGCAGGAGGAGCGCGAGGAGCAGCAGGTGGAGCTGCAGCTGCTGAAGGAGGCGCAGAAACAGAGCCGAGAATCCCTGCAGCGGGAGGAGCAGAGGAGGCGCAGCCAGCATGAGGAGATGCAGAACACACTCAAGAGACAACTGCAGGAGGCCCAGGAggtgcacaacacacacacacacacacacattcttgtaTTCTTGTGGGTTGGTTCTgagttgcatgtgtgtgtgtgtttatttttccaatgtgtgtgtgtgtatgtattcaaatgtgtgtgtgtgtgtgtgtgtcaggcacGAGAGAATCTCCGCGCTGAGGTTGCAGTTCGTGATCTGGAGGCTGAACATCAGCAGAGGAGAATCAGAGAGCTGGAGGATCTTCATCAGCGGCTGCAGGAGGCACTACAGCTGCAGATCAGAGCCAGACAAGAGGAGGAGACCTACAGATACACACAGACcagGCTGCTggcggaggaggaggagaaggtgaAGTCTCTGCTGGCACTGCAGGAGGAACAGGAGGAGCAGATCcttcagacagagagagagaagcaggaGCTGAAGCTGGAGATGGAGAGAAAGTGCCAGGCTCTGGAGGAGGCGCAGGGCCAGCTGGATAAAGTGCGGGCCAGCCGGCGCAGAGTGGACCAGGACATCGCTGCTGCTCAGCGTAAACTCCGGCAGGCCAGTACGAGTGTTAAACACTGGAACGTCCAGATGAACCGCCTGATGCACCCCATCGGCCCTGGAGAAAGGCGAGCATCCTCTGGTAACCTTCTCGCTCCGCCGGTTCGCATCCCATCCGTCAGTGAGAGCGAATCCAGACCTCCAGAGAAACAAACCATCAAACAAAACAGCCTCGACTGCGGAGAAAGCAGCAGCGCGGAGAATATGGACTGCGGAAACACCGAAAACTCAGAGCCGACGGATGTTTAAGAGAGTTTAgcttgttgatttttttaaaagcaccaaaacaaacccaaaaaAAGCCCCGCCTCTTTTTATACCTCTGCTATGTTTACTACTCGtgtagcaaaatttctctggcccagctctggcccacacagttagcttttgcttggcccacatgctgtagtGTATTACGGTACCTGACTCGACcgagtctggcttccagacaagagccaaacatagaccatatctgggccaagtctcaaaGCAAAGTTAACAGAggctgaactgggccagatatgttggtgtgtcacgactgcaatgaaattgataaagcCATGAAGCACTGCCCTTTAGGTGCGCTATGGGCGTGCTTTTTCTCGAAgaaacctgattggtagaatttttttgcctttattcaaaaataataaaaatgtatcaagatagGCCAAACCTACACGGCCCACATACCCATTATTAGCATCTGGGCCAAAtgctacatttgatatctggcccaagtggTGTGCCGCGTTAAAAAACGTTGCCACCTCTGACAAACCCGGGTCCTGTTTGGCCCACCTGCTTTATGACAgggccggatgaatgcctgctgtgccagctttatgtcaaatctgggccagaattctttacTACCTGGgtacatagcaaaatttctctggcccagctctggcccacacaatcagcttttgcttggcccacatgctgtagtgaattacagtacatgactcgactgagtctggcttccagacaagggccaaacatggaccatatctgggccaagtctcaaccaagttaataacccataactgtggctgaactgggccagatgtgTCTGGGCCAGGTGtatcacgactgcaatgaaatgGATAAACTCATGAAGCATTGTGCTTTAGGGGTGCAATTggcatgctttttctcaaagtaacCTAATTGGTATTTTTTAACgcttattttaaatgtgggtcagaGTAGGCCAGACTATCATGGCCCACATataaatttttaacatctgggccaaatactacatttgaaatctggcccaagtcttgagtGCTGCCtgtaagacggtgccacctctgccaaatctgggccatgtttggcccacatgctgaatgcctgctgtgccagctttatgccaaatctgggccagaactctttgctacctgggaagcgactgtattatcatcaataacgttagctgttcagcacaaaagttcataataTACAAAATTGTAAACAATTAAATCTTACCTacgaaatgttctgcctttgtgctttgttttctttgtttgctcgttactacatgtgtagacagcgctaaagtcccgcatcttcacgtagcaacactgtcttgactagtgcggttgaatgacatttgtgctgggagcactgtacaaatatggcggcgctattgacgcatgctcagggtccctatgcgatatctagtgtatatatctatggcacacacatttatatctgacaAATCATCTTCCAAAAAGTACATCACTGAAGCACAGACTGATGGAGCGCAGGCGCACACTTTACTAAAgctatgcatatttttaaaatgtaatcacatcttggcatttctatCAAGCATTTTTAACGCggtattccaaaatgtgcataacaaTATGCTACAGATGGAaactacccacatagcaaaattctctggcccagatctggcccacactatcagcttttgcttggcccacatgctgcagtgaattacggtgcatgattggaccaagtctggcttccagacaaggttTGAACATGGACTATATCTGGGCCATGTCTCAGCCAAGTAAAAaacccataactgagcctgaTCTGAGCCAGTTGGTGTGCCACAACGATAAACTGCTATTTTCTAAAAGCAACCCCTGCTAAAAAatgcagcttaaaccagcctaggctggttggctggttttagctggtcgaccaggctggttttagaggggttttggccacttccaggctggtttccagccatttccagcctggtcttagctggtcaggctggg
>TCONS_00039756
CAGCAGAGGAGAATCAGAGAGCTGGAGGATCTTCATCAGCGGCTGCAGGAGGCACTACAGCTGCAGATCAGAGCCAGACAAGAGGAGGAGACCTACAGATACACACAGACcagGCTGCTggcggaggaggaggagaaggtgaAGTCTCTGCTGGCACTGCAGGAGGAACAGGAGGAGCAGATCcttcagacagagagagagaagcaggaGCTGAAGCTGGAGATGGAGAGAAAGTGCCAGGCTCTGGAGGAGGCGCAGGGCCAGCTGGATAAAGTGCGGGCCAGCCGGCGCAGAGTGGACCAGGACATCGCTGCTGCTCAGCGTAAACTCCGGCAGGCCAGTACGAGTGTTAAACACTGGAACGTCCAGATGAACCGCCTGATGCACCCCATCGGCCCTGGAGAAAGGCGAGCATCCTCTGGTAACCTTCTCGCTCCGCCGGTTCGCATCCCATCCGTCAGTGAGAGCGAATCCAGACCTCCAGAGAAACAAACCATCAAACAAAACAGCCTCGACTGCGGAGAAAGCAGCAGCGCGGAGAATATGGACTGCGGAAACACCGAAAACTCAGAGCCGACGGATGTTTAA

Function

symbol description
def6b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-59 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).

Ensembl:

ensembl_id ENSDARG00000044524

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039754 False 1005 mRNA 0.57 7 978867 987388
TCONS_00039755 False 4060 mRNA 0.51 8 980290 996521
TCONS_00039756 True 588 mRNA 0.57 4 987788 994500

Neighbor

gene id symbol gene type direction distance location
XLOC_019927 NA coding upstream 40040 923511 ~ 938827 (+)
XLOC_019926 stk38b coding upstream 80222 883678 ~ 898645 (+)
XLOC_019925 dennd2db coding upstream 121981 835728 ~ 856886 (+)
XLOC_019924 NA coding upstream 161240 811600 ~ 817627 (+)
XLOC_019923 cry3b coding upstream 169585 786556 ~ 809282 (+)
XLOC_019929 pparda coding downstream 1317 997838 ~ 1019152 (+)
XLOC_019930 si:ch73-352p18.4 coding downstream 32203 1028724 ~ 1042756 (+)
XLOC_019931 camk1ga coding downstream 52846 1049367 ~ 1069407 (+)
XLOC_019932 guca1e coding downstream 95958 1092479 ~ 1109547 (+)
XLOC_019933 si:ch1073-181h11.1 coding downstream 114334 1110855 ~ 1120875 (+)
XLOC_019910 NA non-coding upstream 669663 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 691678 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 918499 51545 ~ 60368 (+)
XLOC_019938 CU570769.1 non-coding downstream 253267 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 320231 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 380810 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 580342 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 653607 1650128 ~ 1653938 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00175457_00185420 NA coding CI01000186 null 175199 ~ 185420 (-)