RNA id: TCONS_00039755


Basic Information

Item Value
RNA id TCONS_00039755
length 4060
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_019928
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 978867 ~ 996521 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttttgTCTCATAACCTTCACAGTGTGTTGCGGATCCCTCATGACCCCGCGGCCCTTGAGAGACACTTTAGCGATGATGACGACGGCCCCGTGTCCAGCCAGGGGTACATGCCCTACCTGAACCAGTTCATTCTGGACAAGgtgaCGGAGGGCACGTTTGTTAAAGAGGAGGTGGATGAGCTCTGCTGGACGCTGTGCTCCAAGAAGAACTACCACCCAGCCGATGATCAGCTCCTAACCAATCAGGACGCTTTGAGGCTGTGGTGTCTGTTCAACTTCCTGGCGGACGACCGATACCCGCTCACACTGGTGCCGGAGGAGgtgGAGTACCTGCTGCGTAAGCTCAGCGCTGTGCTGCCGGTGGAGCTGAGCTGTGTGGAGCTGGAGGAGTGTGTGTCGCAGGAGTGTGTGTCTCCGTCGcaggagtgtgtgagtgtgtggagtTTCCTGCATCTGGTGAACCGCAGCGCCGTCAGTCGAGGAGTCGACGCCGACAGCTTCAGTCTCGCTGTGGAGAAGGTGTACAGAGAGGTGGTGGGAAACGTGCTGAAGGAGGTGCGCTggagtgctgtgtgtgtgtgtgtgtgaatgtgacgtgtgtgcatgtctgtatgtgggtgtgttgtgtgtatctgtgtgtatctgtgtgtatgttttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgcacgTGCAGGGTTACCTGTGGAAGAAGGGTCACCTGCGCAGGAACTGGACGGAGCGCTGGTTCTGTCTGAAGCCCGGCTCTTTCTCCTACTATGTGAGTGAGGACGCGCGGGACTGCAGGGGTGTGATAGAGATGGACCACAACTGCTGTGTGGAGGTGCTGCCAGATCGTGATGGAAAGAGGTGCATGTTCTGTGTAAAGACCCTCAACAAGACCTTCGAGATCAGCGCACCAGACTCCAGACAGAGACAAGAGTGGATCACAGccaTACACACAGCTCTGCGTCTGTCCTCATCAGGCCGCTGGTCCTTGCATGAGGAGCTGAAGTGTATCCGGCGGGAGCAGCGGGCGGAGCGGGAGCGTAGGCGTGTGCTGCGGGTGGAGGAGACGCGGAGGCTGAAGGAGCTGCAGGAGGAGCGCGAGGAGCAGCAGGTGGAGCTGCAGCTGCTGAAGGAGGCGCAGAAACAGAGCCGAGAATCCCTGCAGCGGGAGGAGCAGAGGAGGCGCAGCCAGCATGAGGAGATGCAGAACACACTCAAGAGACAACTGCAGGAGGCCCAGGAggtgcacaacacacacacacacacacacattcttgtaTTCTTGTGGGTTGGTTCTgagttgcatgtgtgtgtgtgtttatttttccaatgtgtgtgtgtgtatgtattcaaatgtgtgtgtgtgtgtgtgtgtcaggcacGAGAGAATCTCCGCGCTGAGGTTGCAGTTCGTGATCTGGAGGCTGAACATCAGCAGAGGAGAATCAGAGAGCTGGAGGATCTTCATCAGCGGCTGCAGGAGGCACTACAGCTGCAGATCAGAGCCAGACAAGAGGAGGAGACCTACAGATACACACAGACcagGCTGCTggcggaggaggaggagaaggtgaAGTCTCTGCTGGCACTGCAGGAGGAACAGGAGGAGCAGATCcttcagacagagagagagaagcaggaGCTGAAGCTGGAGATGGAGAGAAAGTGCCAGGCTCTGGAGGAGGCGCAGGGCCAGCTGGATAAAGTGCGGGCCAGCCGGCGCAGAGTGGACCAGGACATCGCTGCTGCTCAGCGTAAACTCCGGCAGGCCAGTACGAGTGTTAAACACTGGAACGTCCAGATGAACCGCCTGATGCACCCCATCGGCCCTGGAGAAAGGCGAGCATCCTCTGGTAACCTTCTCGCTCCGCCGGTTCGCATCCCATCCGTCAGTGAGAGCGAATCCAGACCTCCAGAGAAACAAACCATCAAACAAAACAGCCTCGACTGCGGAGAAAGCAGCAGCGCGGAGAATATGGACTGCGGAAACACCGAAAACTCAGAGCCGACGGATGTTTAAGAGAGTTTAgcttgttgatttttttaaaagcaccaaaacaaacccaaaaaAAGCCCCGCCTCTTTTTATACCTCTGCTATGTTTACTACTCGtgtagcaaaatttctctggcccagctctggcccacacagttagcttttgcttggcccacatgctgtagtGTATTACGGTACCTGACTCGACcgagtctggcttccagacaagagccaaacatagaccatatctgggccaagtctcaaaGCAAAGTTAACAGAggctgaactgggccagatatgttggtgtgtcacgactgcaatgaaattgataaagcCATGAAGCACTGCCCTTTAGGTGCGCTATGGGCGTGCTTTTTCTCGAAgaaacctgattggtagaatttttttgcctttattcaaaaataataaaaatgtatcaagatagGCCAAACCTACACGGCCCACATACCCATTATTAGCATCTGGGCCAAAtgctacatttgatatctggcccaagtggTGTGCCGCGTTAAAAAACGTTGCCACCTCTGACAAACCCGGGTCCTGTTTGGCCCACCTGCTTTATGACAgggccggatgaatgcctgctgtgccagctttatgtcaaatctgggccagaattctttacTACCTGGgtacatagcaaaatttctctggcccagctctggcccacacaatcagcttttgcttggcccacatgctgtagtgaattacagtacatgactcgactgagtctggcttccagacaagggccaaacatggaccatatctgggccaagtctcaaccaagttaataacccataactgtggctgaactgggccagatgtgTCTGGGCCAGGTGtatcacgactgcaatgaaatgGATAAACTCATGAAGCATTGTGCTTTAGGGGTGCAATTggcatgctttttctcaaagtaacCTAATTGGTATTTTTTAACgcttattttaaatgtgggtcagaGTAGGCCAGACTATCATGGCCCACATataaatttttaacatctgggccaaatactacatttgaaatctggcccaagtcttgagtGCTGCCtgtaagacggtgccacctctgccaaatctgggccatgtttggcccacatgctgaatgcctgctgtgccagctttatgccaaatctgggccagaactctttgctacctgggaagcgactgtattatcatcaataacgttagctgttcagcacaaaagttcataataTACAAAATTGTAAACAATTAAATCTTACCTacgaaatgttctgcctttgtgctttgttttctttgtttgctcgttactacatgtgtagacagcgctaaagtcccgcatcttcacgtagcaacactgtcttgactagtgcggttgaatgacatttgtgctgggagcactgtacaaatatggcggcgctattgacgcatgctcagggtccctatgcgatatctagtgtatatatctatggcacacacatttatatctgacaAATCATCTTCCAAAAAGTACATCACTGAAGCACAGACTGATGGAGCGCAGGCGCACACTTTACTAAAgctatgcatatttttaaaatgtaatcacatcttggcatttctatCAAGCATTTTTAACGCggtattccaaaatgtgcataacaaTATGCTACAGATGGAaactacccacatagcaaaattctctggcccagatctggcccacactatcagcttttgcttggcccacatgctgcagtgaattacggtgcatgattggaccaagtctggcttccagacaaggttTGAACATGGACTATATCTGGGCCATGTCTCAGCCAAGTAAAAaacccataactgagcctgaTCTGAGCCAGTTGGTGTGCCACAACGATAAACTGCTATTTTCTAAAAGCAACCCCTGCTAAAAAatgcagcttaaaccagcctaggctggttggctggttttagctggtcgaccaggctggttttagaggggttttggccacttccaggctggtttccagccatttccagcctggtcttagctggtcaggctggg

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-59 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).

Ensembl:

ensembl_id ENSDART00000065377

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042008 lncRNA upstream 41463 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042007 lncRNA upstream 162663 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042006 lncRNA upstream 171833 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA upstream 171833 807453 ~ 808457 (+) True XLOC_019923
TCONS_00039739 lncRNA upstream 316436 662103 ~ 663854 (+) True XLOC_019919
TCONS_00039763 lncRNA downstream 59197 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039764 lncRNA downstream 66330 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00042009 lncRNA downstream 198350 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039777 lncRNA downstream 265204 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042010 lncRNA downstream 320231 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00039753 mRNA upstream 81645 883678 ~ 898645 (+) True XLOC_019926
TCONS_00039752 mRNA upstream 123404 835728 ~ 856886 (+) True XLOC_019925
TCONS_00039749 mRNA upstream 171389 797105 ~ 808901 (+) False XLOC_019923
TCONS_00039748 mRNA upstream 172432 789828 ~ 807858 (+) False XLOC_019923
TCONS_00039757 mRNA downstream 1317 997838 ~ 1018752 (+) False XLOC_019929
TCONS_00039758 mRNA downstream 10052 1006573 ~ 1018598 (+) False XLOC_019929
TCONS_00039760 mRNA downstream 32203 1028724 ~ 1042756 (+) False XLOC_019930
TCONS_00039762 mRNA downstream 52846 1049367 ~ 1069407 (+) False XLOC_019931
TCONS_00039765 mRNA downstream 95958 1092479 ~ 1109547 (+) False XLOC_019932
TCONS_00039750 other upstream 172776 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 22080 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 43027 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 253267 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 253718 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 326993 1323514 ~ 1329146 (+) True XLOC_019943

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01058576_00001255_00002319.mRNA True 969 mRNA 0.55 4 CI01058576 1090 ~ 2319 (-)