RNA id: TCONS_00039765


Basic Information

Item Value
RNA id TCONS_00039765
length 5202
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_019932
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1092479 ~ 1109547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tagatgtatggatagatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatgtatagatagatagatgtatagatagatagatgtatagatagatagatgtatgtatagatagatagatggatagatagatgtatgtatagatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataaagcagTGAGTCAGTCTGGTAGAGGAGACAGAGGTCGTGATCTGGGGTCAGTGGGTCAGGTCTGCACTCGGCTTGATTCTCTGTAAGCAGCAGGTAATTCACTGTAATTTCCAGAGCGGAAAGTTCAGCCCTGAGGGTGACGTCAGTGCTAATTGGCCGGGACAGAGGCTCGTCCTGTCCCGCCGAGTGCCGTCCCGCTGgctgatctgatctgatctgcAGTGTGAGAGCGAGCCGTGCACCGTCCTGACGCTCCTCAGCATGGGGAACTCCTCCAGCATGTCCGCCACCGAGCTCAGCGCCTGCAAATGCCACCAGTGGTACCGCAAGTTCATGACCGAGTGTCCGTCCGGCCAGCTCACCTTCTACGAGTTCAAGAAGTTCTTCGGCCTCAAGAATCTGTCCGAGAAATCGAACGCATACGTCAATACCATGTTCAAGACCTTCGACATTGACGACgATGGCTGTATTGATTTCATGGAGTATGTGGCAGCTCTGAGTCTGGTCCTGAAAGGCGGTGTTCAGCAGAAGCTGCGCTGGTATTTCAAGCTCTTCGATATGGACGGCAGCGGCTGTATCGACAAGGACGAACTGCTGCTCATCTTCAAGgcgGTTCAAGCCATTAATGGAGCCGAGCCGGAGATCTCTGCAGAGGACTTGGCTGATATGGTGTTTAACAAGATTGATGTTAATGGAGACGgcgAGTTGTCTCTGGAAGAGTTCATGGAGGGCATCTCGGCGGATGAGAAGATCTCAGAGATGCTGACCCAGAGTTTGGATCTGACCCGGATCGTGAGCAACATCTACAACGACTCCTACATCGAGCAGGAGGCCGAGATCATCGAGGATCAAGCATGACAACACTGAGAGTCTGGAGCGGACGCTTTTATTGGCTCCTTCCCAGAGTAGCGAGTGCCGAGTGTAAAACATAGATCGGCCAAAGCTCTGGGTCTGTGCACTAGATTATATCATCTGAACGCACAAAATGCTCCAGTACTGTGAGTGTGTAGTTCAGCCTGAGGGTGGCGCTCTAACACTGACACACAGGCTGTAAGTACACACCACACATGCGTAGAACGCTTCTAGAAATGCCTTAATGTAGAGTTTAATGCCTCTGAATGCTGATTTAGAGTTTTGAACAAGCGTAGGAAATCTTGGtcgcactttattttaatgtacaattcacgcTAACAACAAACCATTCACTAAGAATATAGCTCAATACACTACTGATTAGCTGCTTAATAATAGTTAGTAGGTTAGTAGTTGGGTATTGGGTTGGATTAGAGATGTAGGATATGATCAAACATGCTAATATCTCCTAATAATGCTAAGCCAGTCATAAATgctgtgaattgttacttaaacttaGTGTTACTAAATACTTATTTGCATTATATGTGAGCATATGTAaagatgtatatatttttattaatctactACGTTGTTAAGGAAGTAGCAATTACTGAAGAAGATGACGAATCGAGTCAGAGCGGTTTACGAGGTAATGTGAAGAAAGCAGAGCAGTCTGCAGTTCCGTTTTTCGCCACCGATTTACACTGTAGTTTTATGGGGGCGCTGTTGAGCTCAGTGCTTAGCCTCacttaaagggccagttcacccaaaaatgataataTTCTCATCATTTCTTCACTCTTTACAGGTTTAAAcctgtttaactttatttattctgttaaactcAAAGGAACATATACTGAAAAAGctggaaacctttaaccattgacattcatagtatttTATTTCGGTTTTCCTACTACTAAGTGCTTTTCACTTTcctcaaaaaacaaaactgaagaaagaaactcacacattttttaaacaaaatcacaGCAGTTTTCTGAACATATGAACCGAATTTTccaatatatatttcttttattgcttaaatcaggggtgcccaaacttcttcgtatgaagggccaaaaaccgaATATCATTGAGAGTCGCGGGCTGAAGATGGCCATTGggaatttcctaatttatttcagaatatttcaaaataaatagaaaacattacataaaatcatattaaataatgctggataacattttaaatgataaattatttcaataaaaacaaTCAGATTTATAACAGGGCTGCTGCAGTGAATcgattaaattgataaaaatcgattactaaaagcgttggcaaTGAATTTCATAATCGATTTGTTGTGTCGCGTGACACGGGTATGGTTGATTATTAAAAAGCACTTCAGTTGAAAGGAGTTCAACAGCAGGAGCctacttttgttctgttttgaagtgagggccgtaaagtccctggtgctgaTGTTTCACTCGTTATCCAGCTTGTCAAGCATGACAAGTTAGCATTAACTCATTTACTTTTAGagcggaaataaaaaaaatgaacctGAGTTTGGCGCGGTGTCTGGCGCTGggcagagctctcagtaagggaccgtctgaaaagtgcttctttatttttttttcccccaaaaacaaaaccaacttaaccccgctgagaaagacgtgtcatattatcacaattatgcagcgttttaaccgcctaatgcttattttatgttttagacatgtaaactcacagacttactagtaaaacaaaacatttagagtttgtaaaacacacaaggaagtctaacaatccattcaaatataatttgctgatgtgatttattcatatcagatacacattacacatagTGAACGTAACTTTAAAGCTGAATCTACTCTTCTCTAAGGTCACCAGCCACTTACTTGCATGTGTTTAGGCGGTAACTGGTGAATTTACCGCCGTATTCTGCTTTTATGAATGAGGAGAACTGGTATGTGAACTGGTAAAACTTCTGCTTTTGTCTTTTCGGTTagaaattaatgctttttttattcgATTCATCgaaaaaaaatctagattaatcaattataaaaataatgattagttgcagccctaatttaTAACACAGCGGAGTTcagtgctgaatacactagtcaagcagaatctgcctttgacttaaTTTGCTCACCAAACTCTCTGCATTGTCGGGTGACGGTATttgcatttaaactaaatctgatttacttacaccatttaattgacaCTGGTAATTTCagctagcttttaacaataaaacaaacaaacaaacaaacggttgcattaaatgtgaataaatgtcgataccatccccatcattctcatcactcttctcagatgggatggtgggccaaatcaaaggttatcatgggccaactttgggccctagtttgagcatctctggtttaaatagactataaaaaaacaaatatatgtactgcaatattgaaGACATTTAGAGATGAATTCTTGAGTTAATATAGAGCTCTATGTCTTGTCTAAGGGATAAATATTCTGATATATTTTCTTAAGACTTGCAAAATGCCAAATGTGAGTATAAATCTGCAGTGGTGAATCTGAAAGAGCGTGCCGTTAATGAGCAGTTAGCGGTGCGCTTTCTGTAATGATGCCTGTGAATGCTGATTTAGCATGATCTCCCAAATGCACAGACTGCACTGTAATGATAAGCATGCTGAAGTGGTGAAGTTGCGAGTGGCTCATGATGAGCATTTATATACAGGCTGCGAATTAAACAGTAAATTGTATTGAATTATGCATCGGGGAAGGGGTTCGCTTTTCTTAAACGTACTCTGTGATGATAGATTGTCTAATACATGCTGCAGTGAatcaaatgtatgtttttaaataaattacatctaATTCATGAATAAAACGTATTTAAGTTTTCAGCGTTTTAAAGGATATTTAGTGTATTTTGACCTGCAGTAACatctgattagctatttcagagGCTACTGTTGGTCAAACTACAAACTATGCGTCTaatattactttacttttacGCGATATTTAGAAACAAGCACATATTTTATGAGAAAAGTAACTTGTGAACACTTCTGATGTCCATCGGGGCTCTGAATTTTCCGTTTTCTGCATATTTCCCCACATGGACTGATTGATTAGTGTGATTATTCACTCACAATGGTTTgcaccattataggggtggtcaaatgtacatttattttaattattaatatttttatttaaaatacagatcagagaaAACAATTTCTCACTGTATTAAAGGCCTGACCCCTatatacatcttgttttgatttcTTCAGtggggatcaagcattaattatgacttaattagggttaaacaaccccccccccccccaaaccctcctgtaattcacaccctgaCATTACCATGTCTCAAGAGTTGTAGTTTAGTAAATCTGCTGTGGACAATAAGAATTAATCTCAGAAGATCCGTTCATCTGTGGTTTTCCACCAGCATGTCAGCTCCGGTTTAACATTGGAAAGCAAAGAAATATTAATACTTGTTAGTTTGTCATTTTGAACTCTTTCTCCACCATTGAGCAGAGAACTCGTCTATTAGGAGAAACTGAAGAGTTTTAGGTGTGTTAGGTGCATTGCAGTATAGGAATCCCTAATGCAGGTCCTGAATCATTTACTATATACTTCAGTCTGTGTCTGCTGGGTGTGAAATAGAAGATAATCTGACAAAGTGAAAGCACATTTgcttaacattaacattaagaGAGTGATGAAACTATACTTTGGCGTACTTGCATCtttatgcatatatatgtatatatatatatatgtgtgtttgtgtgtgtgtgtgttcatatgtttgtgtgtctgtttgcttgtgtttgcatgtgtgtgtgttatatatgttGAAAATGCACTACTTTGGAAAAAAATTCCCTTTGTTTGTCAAAGATGTTGCATTTGTGATGAAATCTGTCTGAAATCAAGTGGTGATAAaacatgaacacatgaagataaaataaaatgctgttttgATTAAAAGCAGAGGCTTGCT

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1577 Enables calcium sensitive guanylate cyclase activator activity; identical protein binding activity; and metal ion binding activity. Predicted to act upstream of or within visual perception. Predicted to be located in photoreceptor outer segment. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

Ensembl:

ensembl_id ENSDART00000170119

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039764 lncRNA upstream 25635 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00039763 lncRNA upstream 33926 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00042008 lncRNA upstream 153652 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042007 lncRNA upstream 274852 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042006 lncRNA upstream 284022 803504 ~ 808457 (+) False XLOC_019923
TCONS_00042009 lncRNA downstream 85324 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039777 lncRNA downstream 152178 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042010 lncRNA downstream 207205 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA downstream 207914 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039787 lncRNA downstream 267784 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00039762 mRNA upstream 23072 1049367 ~ 1069407 (+) False XLOC_019931
TCONS_00039760 mRNA upstream 49723 1028724 ~ 1042756 (+) False XLOC_019930
TCONS_00039757 mRNA upstream 73727 997838 ~ 1018752 (+) False XLOC_019929
TCONS_00039758 mRNA upstream 73881 1006573 ~ 1018598 (+) False XLOC_019929
TCONS_00039755 mRNA upstream 95958 980290 ~ 996521 (+) False XLOC_019928
TCONS_00039767 mRNA downstream 1308 1110855 ~ 1120875 (+) True XLOC_019933
TCONS_00039768 mRNA downstream 13563 1123110 ~ 1127794 (+) False XLOC_019934
TCONS_00039769 mRNA downstream 14326 1123873 ~ 1130263 (+) True XLOC_019934
TCONS_00039770 mRNA downstream 28450 1137997 ~ 1146970 (+) False XLOC_019935
TCONS_00039771 mRNA downstream 28470 1138017 ~ 1146989 (+) True XLOC_019935
TCONS_00039761 other upstream 52730 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 73327 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 284965 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039775 other downstream 140241 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 140692 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 213967 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039812 other downstream 467316 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 521139 1630686 ~ 1633449 (+) False XLOC_019968

Expression Profile

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