XLOC_019968 (si:dkey-1b17.1)


Basic Information

Item Value
gene id XLOC_019968
gene name si:dkey-1b17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1630686 ~ 1633473 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039818
GCTCCCGCCTCGCCGTGATGACGTCAGCGCTTGACGCGTTCAGtcagcgtcgagtcttcagagctgagtgaaagacaaaggcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGGTGGTGAAGGAGGAGAGCGAAGCACcgagtgaagatgaggagaaacatcatgtcaagaATG
>TCONS_00039819
agagctgaggtgagtcgtttTCGCTTTTTTCTCGTGTTtatacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcgGAGAGAAGCTCTGAGAGGACaatatgagtgaatgtgtttgGGTTCTATGTTAATCTccatcagtgaaagacaaaggcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGGTGGTGAAGGAGGAGAGCGAAGCACcgagtgaagatgaggagaaacatcatgtcaagaATGAGAACAGAACAGCCGTGAACGGTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-688 No description available

Ensembl:

ensembl_id ENSDARG00000102258

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039818 False 229 processed_transcript 0.49 3 1630686 1633449
TCONS_00039819 True 399 mRNA 0.43 3 1630745 1633473

Neighbor

gene id symbol gene type direction distance location
XLOC_019967 si:ch211-255f4.13 coding upstream 11456 1615691 ~ 1619230 (+)
XLOC_019966 znf1183 coding upstream 17100 1610183 ~ 1613586 (+)
XLOC_019965 si:ch211-255f4.11 coding upstream 36535 1589407 ~ 1594151 (+)
XLOC_019964 si:ch211-255f4.11 coding upstream 44162 1586060 ~ 1586524 (+)
XLOC_019963 AL954741.1 coding upstream 52940 1576863 ~ 1577746 (+)
XLOC_019969 si:dkey-1b17.2 coding downstream 8074 1641547 ~ 1644006 (+)
XLOC_019970 BX649416.2 coding downstream 16655 1650128 ~ 1653938 (+)
XLOC_019971 NA coding downstream 26714 1660187 ~ 1665471 (+)
XLOC_019972 si:dkey-1b17.5 coding downstream 34998 1668471 ~ 1675510 (+)
XLOC_019973 si:dkey-1b17.6 coding downstream 47155 1680628 ~ 1687170 (+)
XLOC_019947 BX322657.1 non-coding upstream 246617 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 265825 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 362866 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 691859 923511 ~ 938827 (+)
XLOC_019977 BX649416.3 non-coding downstream 92095 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 244674 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 373768 2007241 ~ 2290657 (+)

Expression


Co-expression Network