XLOC_019965 (si:ch211-255f4.11)


Basic Information

Item Value
gene id XLOC_019965
gene name si:ch211-255f4.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1589407 ~ 1594151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039814
ATGGAACAAAGTGTTTTAATGAACAACACAGCTGTAAACAATTTcatctgcactcagtgtggaaagagtttcagccgcaAGTGCAGTTTCAGTCttcacatgaagacccacactggaaagaaaccttacaagtgtacACAGTGCGACAAGAGATACCGAAATTCAAGACATCTGAGATCACACATGAAGAGTCACCCTGGAGTGAAACCGTTTCACTGCATTGATTGTGGGAAGAGATTTGCAGATTCAACTTCTCTACGAACACATGCGATAACATTTCATAAACAGAGTGAAAACATGAAACTCTACCTCAATGTTCGTTCGAAGAAGAGGCCGTATGTATGCTTATCATGTGGAAACAGTTACAACCATCCagacaaattaaaaaaacatgaggTTGTCCACACTGGAGACAAACCTTTCCCGTGTTCACACTGCGGCAAATCATTCAGCCAGTTAGGAAACCTGAAActacatgagaggattcacactggagagaaaccgtacaagtgttcacactgcagtaAGAGCTTCAATCAGTCTGCAAATCTGAAAACGCATGAGATGAtgcacaccggagagaagccatTCGCATGTCCTGAGTGTGGGAAGAGATTCAGACACTCATCGCACATGGGTCGACACATGAAgacacacactggagagaaaccacacGAATGTGAGCAATGCGGCAAAACGTTTTTGACCGTTTCAGAGCTGAAGGAGCATCGTAGGGTTCACACGAAGGAGAGGCCTTATTCATGCTCGGAGTGTGGAAATTGTTTTACACGACTGACAAGTTTAAGAAAACAtgagaagatccacactggtgtgaaaaaTCATGTGTGCGGCGTGTGTGGGAAGGCTTTCATTTCATCTGGAGACTTGATACGGCACAAGAGAACTCACACTGATGAGAAGCCATACATATGTGTCGATTGTGGGAAGAGCTTCAAGAAATTATCATATCTCAGTAAACACTTGAAATTCTGCCCTGGAGGGAAAACGCAAAACTGA

Function

symbol description
si:ch211-255f4.11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102099

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039814 True 1017 mRNA 0.44 2 1589407 1594151

Neighbor

gene id symbol gene type direction distance location
XLOC_019964 si:ch211-255f4.11 coding upstream 2883 1586060 ~ 1586524 (+)
XLOC_019963 AL954741.1 coding upstream 11661 1576863 ~ 1577746 (+)
XLOC_019962 si:ch211-255f4.9 coding upstream 20373 1568306 ~ 1569034 (+)
XLOC_019961 AL954741.2 coding upstream 21437 1560991 ~ 1567970 (+)
XLOC_019960 si:ch211-255f4.8 coding upstream 31634 1556948 ~ 1557773 (+)
XLOC_019966 znf1183 coding downstream 16032 1610183 ~ 1613586 (+)
XLOC_019967 si:ch211-255f4.13 coding downstream 21540 1615691 ~ 1619230 (+)
XLOC_019968 si:dkey-1b17.1 coding downstream 36535 1630686 ~ 1633473 (+)
XLOC_019969 si:dkey-1b17.2 coding downstream 47396 1641547 ~ 1644006 (+)
XLOC_019970 BX649416.2 coding downstream 55977 1650128 ~ 1653938 (+)
XLOC_019947 BX322657.1 non-coding upstream 205338 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 224546 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 321587 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 650580 923511 ~ 938827 (+)
XLOC_019971 NA non-coding downstream 66036 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 131417 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 283996 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 413090 2007241 ~ 2290657 (+)

Expression


Co-expression Network