XLOC_019971


Basic Information

Item Value
gene id XLOC_019971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1660187 ~ 1665471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041847
TTTAGTTTTTGGTGACGGGAAACTTTGAATATTTAGTTCTAAGTATGTGGATGGTATCTTTAGTGAGTTTACGTGAAATTGAGTTTCTATAAACCACTAGAGGATAAATaatgttgttaaataaatttcTAATCTTGGCCTTTTGTTTACATTATCAATTGTTTTGGCCGGTCAGTATAATTTGGCGCGTTTTGCGCTTGCGCTCGCCTTGCCCTGATGACGTCAGCGCTGACGCGTTCattcagcgtcgagtcttcagagctgaggtgagtcgttttcgctttttctcgtgtttacacaacaataaaacacactttacagcttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagaGAGGAGCTCTGAGAGGACAATATGAGTGAATTATATATGCTAACGTTTTTCCCCACGTTTCTATTCGTTATAGCAAATTATGATCTGTGAATGGAAGTTTGCAGCAGATATGCACTTTACGCTGCTCTTTTTATAGTTCTGATTTCCCAGTTTCTAGATGTGCTACTGCTAACAATCTAAATGCTTTATTTGTATGAATACTTGCTTTTCACATTATATGTTGACATAGATGCCAAAAATCAATTGTAATTGTGTTGTCCTGCAAAACACCCAGTATTAAGCAAACTGATCTAATGACTGTTCAATGAGTGGTTTAGTCTGAGGCTCATCAATATTATCAGAGCTGCTGAAATCCTCTTTATTTCATGTTAATAGTTCCTGTTTTCCCCTGTTCATTATACTGATGTCTTCAGATCCACATATTGCCAAGTTTTTTGGAGGAtggtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGGGAAGAAGACACTCAATCGGACACTGAACATGATGTTTCAGCGAACCAAACGGCTTCAAATGCTTTGACCTGCGTTCAGTGTGGAAAGACTTTCGGGAGCAAGTACAATCTCAAGagtcacatgaggatccacactggagagaaaccgtacaagtgctCACACTGCGAGAAGAGATTCAGTCATTCAGGACAAAAGAAATCACACGAGAGGATGCACACCGGAGAGAGACCCTATTACTGCACCGCTTGTGGGAAGAGTTTCGCTTATTTAAATTGtctacaaatacacacacagaaaattCACGACCTGACTGTGAAGAGGAAGAAAAACCCAAGTGAAGGATCGAGTGAAGCCATGAAGGACCACAATAGTGTTGATGCAAAGAAGCCCAATTCGTGCTCAtggtgtggaaagagttttacactTCAACAAAATCTAAGAAAGCACGAgagagttcacactggagagagaccctacacgtgttcacactgcgacaagagattcatcTACTTGGGAAATATGAAAAGACATGAGAtgactcacaccggagagaaaccgtaccagtgttcacactgcgagaTGAGATTTAGTCTGCTGAACAACATGAAGAGACAcgagatgatccacactggagagaaaccgttcacatgtacTCGGTGTCGGAAGAGTTTCAGACAGTCGTCCTCCCTTCatcaacacatgaagatccacactggagataGACCGTACAAGTGTGTTCAGTGCTGCAAAACGTTTTTTAAGGATTCGCAGCTGAAGAAGCATCTCAGGGTGCATGCAAACGAGCAGCCGTACTCGTGCtttgagtgtggaaagagttttgcgCATCAACAACTTTTAACAAAACATCAGAAGATCCATAATAGTGTGAGAAAATACGCGTGCTTCGCGTgcgagaagacttttattaaagCTGGAGACTTGAAACGACACCACAGGATCCACACCGgggagaaaccgtacaagtgttcacactgcgacaagagattcagccAGTCAGGACAGCTGAAATTACATGAccggatccacaccggagagaagacGCACAATTGTGATCAATGCCGCGAGACTTTTTTGAGCGCTTCAGAGCTGAGGGAGCATCTTAGTCTTCATACAAATGAAAATGCTTAA
>TCONS_00039822
CTGACGCGTTCattcagcgtcgagtcttcagagctgagAGCTGCTGAAATCCTCTTTATTTCATGTTAATAGTTCCTGTTTTCCCCTGTTCATTATACTGATGTCTTCAGATCCACATATTGCCAAGTTTTTTGGAGGAtggtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcat
>TCONS_00039823
ATGGTGCTATTGACTTACTTTTCAGATGTGAtggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGGGAAGAAGACACTCAATCGGACACTGAACATGATGTTTCAGCGAACCAAACGGCTTCAAATGCTTTGACCTGCGTTCAGTGTGGAAAGACTTTCGGGAGCAAGTACAATCTCAAGagtcacatgaggatccacactggagagaaaccgtacaagtgctCACACTGCGAGAAGAGATTCAGTCATTCAGGACAAAAGAAATCACACGAGAGGATGCACACCGGAGAGAGACCCTATTACTGCACCGCTTGTGGGAAGAGTTTCGCTTATTTAAATTGtctacaaatacacacacagaaaattCACGACCTGACTGTGAAGAGGAAGAAAAACCCAAGTGAAGGATCGAGTGAAGCCATGAAGGACCACAATAGTGTTGATGCAAAGAAGCCCAATTCGTGCTCAtggtgtggaaagagttttacactTCAACAAAATCTAAGAAAGCACGAgagagttcacactggagagagaccctacacgtgttcacactgcgacaagagattcatcTACTTGGGAAATATGAAAAGACATGAGAtgactcacaccggagagaaaccgtaccagtgttcacactgcgagaTGAGATTTAGTCTGCTGAACAACATGAAGAGACAcgagatgatccacactggagagaaaccgttcacatgtacTCGGTGTCGGAAGAGTTTCAGACAGTCGTCCTCCCTTCatcaacacatgaagatccacactggagataGACCGTACAAGTGTGTTCAGTGCTGCAAAACGTTTTTTAAGGATTCGCAGCTGAAGAAGCATCTCAGGGTGCATGCAAACGAGCAGCCGTACTCGTGCtttgagtgtggaaagagttttgcgCATCAACAACTTTTAACAAAACATCAGAAGATCCATAATAGTGTGAGAAAATACGCGTGCTTCGCGTgcgagaagacttttattaaagCTGGAGACTTGAAACGACACCACAGGATCCACACCGgggagaaaccgtacaagtgttcacactgcgacaagagattcagccAGTCAGGACAGCTGAAATTACATGAccggatccacaccggagagaagacGCACAATTGTGATCAATGCCGCGAGACTTTTTTGAGCGCTTCAGAGCTGAGGGAGCATCTTAGTCTTCATACAAATGAAAATGCTTAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0048793 pronephros development biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0003260 cardioblast migration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0039019 pronephric nephron development biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041847 False 2130 lncRNA 0.42 3 1660187 1665471
TCONS_00039822 False 260 processed_transcript 0.42 3 1660415 1661346
TCONS_00039823 True 1239 processed_transcript 0.45 2 1661266 1665471

Neighbor

gene id symbol gene type direction distance location
XLOC_019970 BX649416.2 coding upstream 6249 1650128 ~ 1653938 (+)
XLOC_019969 si:dkey-1b17.2 coding upstream 16181 1641547 ~ 1644006 (+)
XLOC_019968 si:dkey-1b17.1 coding upstream 26714 1630686 ~ 1633473 (+)
XLOC_019967 si:ch211-255f4.13 coding upstream 40957 1615691 ~ 1619230 (+)
XLOC_019966 znf1183 coding upstream 46601 1610183 ~ 1613586 (+)
XLOC_019972 si:dkey-1b17.5 coding downstream 3000 1668471 ~ 1675510 (+)
XLOC_019973 si:dkey-1b17.6 coding downstream 15157 1680628 ~ 1687170 (+)
XLOC_019974 znf1160 coding downstream 25822 1691293 ~ 1698178 (+)
XLOC_019975 znf1154 coding downstream 35081 1700552 ~ 1704666 (+)
XLOC_019976 si:dkey-1b17.9 coding downstream 43289 1708760 ~ 1713309 (+)
XLOC_019963 AL954741.1 non-coding upstream 82441 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 276118 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 295326 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 392367 1249788 ~ 1267820 (+)
XLOC_019977 BX649416.3 non-coding downstream 60097 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 212676 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 341770 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 494568 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 510386 2175857 ~ 2178463 (+)

Expression


Co-expression Network