XLOC_019972 (si:dkey-1b17.5)


Basic Information

Item Value
gene id XLOC_019972
gene name si:dkey-1b17.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1668471 ~ 1675510 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039824
TTCattcagcgtcgagtcttcagagctgagCTCTGCCACCATCAGTGAAAGACAAatacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcacaattaaacaggaagagactgaagaactaatagATGTGATGGTGAAGGTAGAGAATGAAGaactgagtgaagatgaggagaaacatcatgtcaaaaagGAAGAAGAAACTCGGATAAAAACCGAACATGGTGTGTCAATGGAAACAACAACCATAAAAGGTTTGACCTGCACtcattgtggaaagagttttcGGGACAAATACAATCTGAGGactcacatgatgatccacactggagagaaaccttacaagtgttcacactgcgacaagagattctaTACTTCAGCACATCTGAAAACACACGAGAGGacgcacactggagagaaaccttacaagtgttcacactgcgagaaGAGATTCGCAGATTTAGGACACATGAAGAcacatgagaggactcacactggagagaaaccgtaccgCTGCTCTGATTGTGGGAATAGTTTCAAACTATTTTCTTATCTacaaagacacacaaaaaaatatcac

Function

symbol description
si:dkey-1b17.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-704 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000101425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039824 True 592 mRNA 0.42 3 1668471 1675510

Neighbor

gene id symbol gene type direction distance location
XLOC_019971 NA coding upstream 3000 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 coding upstream 14533 1650128 ~ 1653938 (+)
XLOC_019969 si:dkey-1b17.2 coding upstream 24465 1641547 ~ 1644006 (+)
XLOC_019968 si:dkey-1b17.1 coding upstream 34998 1630686 ~ 1633473 (+)
XLOC_019967 si:ch211-255f4.13 coding upstream 49241 1615691 ~ 1619230 (+)
XLOC_019973 si:dkey-1b17.6 coding downstream 5118 1680628 ~ 1687170 (+)
XLOC_019974 znf1160 coding downstream 15783 1691293 ~ 1698178 (+)
XLOC_019975 znf1154 coding downstream 25042 1700552 ~ 1704666 (+)
XLOC_019976 si:dkey-1b17.9 coding downstream 33250 1708760 ~ 1713309 (+)
XLOC_019977 BX649416.3 coding downstream 50058 1725568 ~ 1732110 (+)
XLOC_019963 AL954741.1 non-coding upstream 90725 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 284402 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 303610 1316752 ~ 1364861 (+)
XLOC_019991 BX640576.1 non-coding downstream 202637 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 331731 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 484529 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 500347 2175857 ~ 2178463 (+)

Expression


Co-expression Network