XLOC_019975 (znf1154)


Basic Information

Item Value
gene id XLOC_019975
gene name znf1154
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1700552 ~ 1704666 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039828
TTCattcagcgtcgagtcttcagagctgagCTccatcagtgaaagacaaagacagagtttattaAAGGACAgagagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATGGTGAAGGAGGAGAGTAAAGAAgtgagtgaagatgaggagaaacatcatgtcaaaagtGAAAGCGAAACTCAAACAAATGCAGAAGACCTTATCTTAATGGAAAGAACAGCAGTAAAAGGTTTAACCTGcattcagtgtggaaagagtttcaagtGCAAACAGAATCTTAAGTTTCACatgctgatccacactggagagaaaccacacGGATGCGATCGGTGCGACAAAACGTTTTCTAGGGCTTCACAGCTGAAGAAACATCTTAGAGTTCATACGAAAGAGATGCTTTGCTTATGTCTTTTatgtggaaagagtttttcaCAGCGGTCACATTTAAAAGCGCaccagaagatccacactggcgTGAAAGAGCATGCGTGCTTCGAGTGTGAGAAGACGTTTTTTACATCTGGAGACTTGAAAaagcaccagaggattcacaccggagagaaaccatttgtGTGTTCGCACTGCAACCAAACATTCAGACATTCAGGAAATCTGAAAACACACGAGAGGAcgcacactagagagaaaccgtTCAtgtgtactcagtgtgggaagagtttcacacagTCGTCGCACCTTAATTCACACAAGCTgctccacactggagagaaaacacacaagtgTGATCAGTGCAGCAAGACATTTTTGAGGCCGTCAGAGCTGAAGATCCATCTCAGAGTTCATACAGAAGAAAAGCCTTATTCGTGCtttgagtgtgggaagagttttacacATCCGTCATATTTAAGTgaacatcagaagatccacactggtgtgagagagtttgTCTGCTTTgactgtgggaagagttttattaAAGCTGGAAACTTGAAACGACAccagatgatccacactggagagaaaccgtacaagtgttcacagaGCATTCACGTGGATTAAAGTTCTCCATCGCTATGATGGATTAAcatcaatgggctatatgcacagctagtgcttTTCAG

Function

symbol description
znf1154 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-28 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000100882

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039828 True 1113 mRNA 0.43 3 1700552 1704666

Neighbor

gene id symbol gene type direction distance location
XLOC_019974 znf1160 coding upstream 2374 1691293 ~ 1698178 (+)
XLOC_019973 si:dkey-1b17.6 coding upstream 13382 1680628 ~ 1687170 (+)
XLOC_019972 si:dkey-1b17.5 coding upstream 25042 1668471 ~ 1675510 (+)
XLOC_019971 NA coding upstream 35081 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 coding upstream 46614 1650128 ~ 1653938 (+)
XLOC_019976 si:dkey-1b17.9 coding downstream 4094 1708760 ~ 1713309 (+)
XLOC_019977 BX649416.3 coding downstream 20902 1725568 ~ 1732110 (+)
XLOC_019978 znf1159 coding downstream 30315 1734981 ~ 1738040 (+)
XLOC_019979 znf1169 coding downstream 46974 1751640 ~ 1757459 (+)
XLOC_019980 znf1178 coding downstream 63293 1767959 ~ 1773733 (+)
XLOC_019963 AL954741.1 non-coding upstream 122806 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 316483 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 335691 1316752 ~ 1364861 (+)
XLOC_019991 BX640576.1 non-coding downstream 173481 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 302575 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 455373 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 471191 2175857 ~ 2178463 (+)

Expression


Co-expression Network