XLOC_019980 (znf1178)


Basic Information

Item Value
gene id XLOC_019980
gene name znf1178
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1767959 ~ 1773733 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039833
agtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATGGTGAAGGAGGAGAGCGAAGaactgagtgaagatgaggagaaacatcatgtcaaaactGAAACAATATCTCACACAAAAACCGAACAAAGTTTTTTAATGGAAAGAGCAGCTGAGAATGGTTTcatctgcactcagtgtggaaagagttacaGCCGCAAATGCGCTCTCAAgcttcacatgaggatccacaccggagagaaacccttCAAGTGTTCGCACTGCGACATGAGCTTCTTTTGTTCGGGATATCTGAAAACACACGAGatgacccacactggagagagaccgttCGTGTGCGcgcagtgtgggaagagttataGCCACAAAAACAACCTCAAgcttcacatgaggatccacactggggagaaaccattcaagtgttcacactgtgagaGGAGGTTTAGTAATGCAGGACACCTGAAACATCACAGAATGattcacacaggggagaaaccgttcacatgtgctcagtgtggaaagagtttcacacgGCAGTCGTGTTTAGCACAGCATCAGCAGATCCACACTGGGGTGAGTAAGCATGTCTGCTTAATGTGTCAGAAGACTTTTATTAGAGCTGGGAACTTGAGACAACACCAGATGacgcacactggagagaaaccgtacacgtgttcacactgcgacaagagcttCAGCCAGTTTAAAGTGCTGAAAATACAtcagaggactcacactggagagaaaccgttcacatgtactcagtgtgggaagagcttcacACAATCTtcacaccttaatcgacacatgctgatccacaccggagagaaaacGCACATATGTGATCAGTGCAGCAAGACATTTTTGAGGCCTTGCGAGCTGAAGAGACATCTTAAAGTTCATACAAAGAAATCTTACTCT

Function

symbol description
znf1178 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-466 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000100127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039833 True 951 mRNA 0.45 2 1767959 1773733

Neighbor

gene id symbol gene type direction distance location
XLOC_019979 znf1169 coding upstream 10500 1751640 ~ 1757459 (+)
XLOC_019978 znf1159 coding upstream 29919 1734981 ~ 1738040 (+)
XLOC_019977 BX649416.3 coding upstream 35849 1725568 ~ 1732110 (+)
XLOC_019976 si:dkey-1b17.9 coding upstream 54650 1708760 ~ 1713309 (+)
XLOC_019975 znf1154 coding upstream 63293 1700552 ~ 1704666 (+)
XLOC_019981 znf1154 coding downstream 5668 1779401 ~ 1783013 (+)
XLOC_019982 znf1154 coding downstream 12497 1786230 ~ 1794873 (+)
XLOC_019983 znf1179 coding downstream 22324 1796057 ~ 1800444 (+)
XLOC_019984 znf1168 coding downstream 32502 1806235 ~ 1809533 (+)
XLOC_019985 znf1184 coding downstream 41675 1815408 ~ 1818563 (+)
XLOC_019971 NA non-coding upstream 102488 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 114021 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 190213 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 383890 1377331 ~ 1384069 (+)
XLOC_019991 BX640576.1 non-coding downstream 104414 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 233508 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 386306 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 402124 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 463419 2237152 ~ 2239093 (+)

Expression


Co-expression Network