XLOC_019982 (znf1154)


Basic Information

Item Value
gene id XLOC_019982
gene name znf1154
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1786230 ~ 1794873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039835
CTCGCCGTGATGACGTCAGCGCTGACGCGTTCattcagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagggtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaTGTGATGGTGAAGGAGGAGAGAGAAGACctgagtgaagatgaggagaaacatcaggTCAAGAGTGAAGAAGAAACTCGCATAAAGATTGACCATAATTTTTTGATGGAAACAACAGCCGTGAAAgatttcacctgcactcagtgtggaaagagtttcagccagaAATACAATCTCAAcgttcacatgaggatccacactggagaacaaccttacaagtgttcacactgcgacatgaGATTCCATTGTGCAAGAAACCTGAAATCACATGAGATgcttcacactggagagaaaccacacAAATGCGATCACTGCAGCAAAACCTTTATAAGGGCTACAGATCTGAAGATGCATCTAAGAGTtcatacaaaggagaagccttattcatgctctgtgtgtggaaagagttttacacaGACGTCAAGTTTAAGGAAGCAtgagaagatccacactggagtgagagagtttgtgtgctttgagtgtgggaagagtttcattaAAGCTGGAGACTTGAAACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacttGAGATTCAGGTATTTAGGACACCtaaaagcacatcaaatgaatcTCACTTCAGAAGAACAGTTGGCGTgtactcaatgtgggaagagctTCAGACAATTAACAAAACTTAATCGACACATGCTGATCCACACGGGAGAGAGACCACACAAATGCGATCAGTgctgtaaaacatttttgaaggCTTCAGGGCTGAAGAAACATCTTCGAGTTCATACTAACGAGAGGCCTTATTCATGCTCTGTGTGTGGAAATAGGTTTACGCAGGCGTCAAGTTTAAGAAAACATCAGCATATCCACACTGGCGTGAGAGAGTTCGTCTGCTCTgagtgtgagaagagttttatTACAGCTGGAGACTTGAGACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacaagagatttcGTAGGTCTGAACGCCTGAAAGCACATGAGATAACTCACAGAGAGAAACACACAAATGCTATCAGTTTTGCACATCAATGAATTTTTTTATTCCTGAAAACTCTTGTTTGTATGTTAATGAATTCCAGTCATTTGTAAGTAGGGCACATGTAGCTTAATTACAATTAGCATATCTCCAGGCATGAATTGCAGCTGTGTAATTGTTTGTCCAGCAATGCAGTGGAATATTTATTAGTTTGGCTCAAACAACAGATCATTTGTTTGCGATGATTTGTAATCCATGATTGTTAAGTAGTatcttgcttttaaaaataacactgtaaaatataaaaaaagtaaaaggtCATTCGTTTTAAAAGGTTAGAAAAGTGTAGCAGCCAGTATTATCATTTATTAAGTATGTACAAATTGTTGCTTGTTAAGGATCTTTACACTTATCTATAAACAATACTGTTTATACGATACattggatgttttttttcattatttttttatactttcttcgagctgttatttaaaaaaaagttttagattaCATTAAGAATTTTATACACGTTTTACAGGTCTGCAAAGAAGtactacgttttttttttatttagtgtatttataaaaatgttttaagtgaCTAATTAACAGTTTTCACCTCACACattgaataaaacagatttttttttttggcc
>TCONS_00039836
attcagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagggtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagAGGAGCTGAAATAGGGTGCTGggataaacagtttttttaaacaagtttagcagcggccagctagtgaagtgctgtgcaagtaaacctcatGCCTCCAACCTGTAAAGgagacagacgctagaggccaagacctccttggtagagcaactgacttcatgcggaaggtcgccagttcaATCCCACCCTGGAGCGGGTTGCGTGGCGTAGGACCGGAGGGGTTACATTGAtgctgtgacccggatgggagtgaggtttagagtGTAGTAGACACCAGCTAGTGAAGAgcagtgcaggtaaacctcaagCCTCATTCACGCTATGAACAAATCGCAGCGGGAAAGCAACAATCGAGCGTTCATTTTAACAGGGAGCGAGAGGCTTTCGACGACATCCGTCTACGCATGCGACAGTGACTGTTGGCGACCAGGTGGACATGTCGAACGACACAACAAAATTGAGAATACTTCAACTATATTGAAAAAAAGATAAAGAGCGACTTTCTCAATGAAGAGCGATCCTCTCTCAGCTTGGTCAGAGGCCGGTTTTATTCATCCTGTATATACCAACACAGACCTGCATTTGAagcaggtcgccacccagagcgacaggcagagACAAAGTCATTGCTAGTCTGAATGAGGCTTCACTCCTTTGacatctaaaggtgctctagcaacatacactagaggccatggtctttagcctacttggtagagcaaccgacttccatgcaGAAGGCCGATCTTAACCTAGAgaaggttgggtggtgtaggaccgacGGTGTTACACAAGGACAAATGAAAAGTAATGTGCTCTTGGCAAGTTGCTTTTCCAGGATTATTTTTGTGGCATGTCTTCTGCACAATCACTGCAAAGACACAGGTGTTAGTCATTTGCCAATTGATCAGCTTAAAAGTCGCCATTCCGATTCATTTTTCATCATTTCATCAGTTCATCACTTGACTgtactattaaaaactagcctagaagtGGCATCTGCTGTAAAACTAGCCTTTTAAAATGCACcgtatttacttaattttttagaTGTGATGGTGAAGGAGGAGAGAGAAGACctgagtgaagatgaggagaaacatcaggTCAAGAGTGAAGAAGAAACTCGCATAAAGATTGACCATAATTTTTTGATGGAAACAACAGCCGTGAAAgatttcacctgcactcagtgtggaaagagtttcagccagaAATACAATCTCAAcgttcacatgaggatccacactggagaacaaccttacaagtgttcacactgcgacatgaGATTCCATTGTGCAAGAAACCTGAAATCACATGAGATgcttcacactggagagaaaccacacAAATGCGATCACTGCAGCAAAACCTTTATAAGGGCTACAGATCTGAAGATGCATCTAAGAGTtcatacaaaggagaagccttattcatgctctgtgtgtggaaagagttttacacaGACGTCAAGTTTAAGGAAGCAtgagaagatccacactggagtgagagagtttgtgtgctttgagtgtgggaagagtttcattaAAGCTGGAGACTTGAAACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacttGAGATTCAGGTATTTAGGACACCtaaaagcacatcaaatgaatcTCACTTCAGAAGAACAGTTGGCGTgtactcaatgtgggaagagctTCAGACAATTAACAAAACTTAATCGACACATGCTGATCCACACGGGAGAGAGACCACACAAATGCGATCAGTgctgtaaaacatttttgaaggCTTCAGGGCTGAAGAAACATCTTCGAGTTCATACTAACGAGAGGCCTTATTCATGCTCTGTGTGTGGAAATAGGTTTACGCAGGCGTCAAGTTTAAGAAAACATCAGCATATCCACACTGGCGTGAGAGAGTTCGTCTGCTCTgagtgtgagaagagttttatTACAGCTGGAGACTTGAGACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacaagagatttcGTAGGTCTGAACGCCTGAAAGCACATGAGATAACTCACAGAGAGAAACACACAAATGCTATCAGTTTTGCACATCAATGAATTTTTTTATTCCTGAAAACTCTTGTTTGTATGTTAATGAATTCCAGTCATTTGTAAGTAGGGCACATGTAGCTTAATTACAATTAGCATATCTCCAGGCATGAATTGCAGCTGTGTAATTGTTTGTCCAGCAATGCAGTGGAATATTTATTAGTTTGGCTCAAACAACAGATCATTTGTTTGCGATGATTTGTAATCCATGATTGTTAAGTAGTatcttgcttttaaaaataacactgtaaaatataaaaaaagtaaaaggtCATTCGTTTTAAAAGGTTAGAAAAGTGTAGCAGCCAGTATTATCATTTATTAAGTATGTACAAATTGTTGCTTGTTAAGGATCTTTACACTTATCTATAAACAATACTGTTTATACG

Function

symbol description
znf1154 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-28 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000104065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039835 False 1847 mRNA 0.39 3 1786230 1794873
TCONS_00039836 True 2643 mRNA 0.42 3 1786262 1794654

Neighbor

gene id symbol gene type direction distance location
XLOC_019981 znf1154 coding upstream 3217 1779401 ~ 1783013 (+)
XLOC_019980 znf1178 coding upstream 12497 1767959 ~ 1773733 (+)
XLOC_019979 znf1169 coding upstream 28771 1751640 ~ 1757459 (+)
XLOC_019978 znf1159 coding upstream 48190 1734981 ~ 1738040 (+)
XLOC_019977 BX649416.3 coding upstream 54120 1725568 ~ 1732110 (+)
XLOC_019983 znf1179 coding downstream 1184 1796057 ~ 1800444 (+)
XLOC_019984 znf1168 coding downstream 11362 1806235 ~ 1809533 (+)
XLOC_019985 znf1184 coding downstream 20535 1815408 ~ 1818563 (+)
XLOC_019986 znf1002 coding downstream 26845 1821718 ~ 1825814 (+)
XLOC_019987 znf1183 coding downstream 41909 1836782 ~ 1838576 (+)
XLOC_019971 NA non-coding upstream 120759 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 132292 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 208484 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 402161 1377331 ~ 1384069 (+)
XLOC_019991 BX640576.1 non-coding downstream 83274 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 212368 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 365166 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 380984 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 442279 2237152 ~ 2239093 (+)

Expression


Co-expression Network