RNA id: TCONS_00039760


Basic Information

Item Value
RNA id TCONS_00039760
length 1579
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_019930
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1028724 ~ 1042756 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAGCGTTTTGAGGGTTTCGAGCAGGACTTCGGTCACATGAGATGCTGAAATCTTCCTAATACAGATTAGACGGATCAGCACTCAAATCATGAGGCCTCTGGAGGAGCGCAGAAGCAGCGATGAATGAATCAGGCCTGTGTGATTATGCTGGAATACTGGGAGACAGTGACGACAGTGATGACGATCCAAACCTAGCCAAGCAGTTAGCGGCTTCCTGGGAGAGTTTATCCATCATGGACAGACTGGGATTGAAGAGCAGTGTGGAGATGACGGAGCAGGAGGTGGAGAGCGCGTTTACCCAGTTCGTGATGGGATTTCACTGCGACCAGTACACGCTAACGCAGCGTCTGCAGGCGGAGCGACACGACCGCATCGTAGCGGAGGAGAACCTGCAGAGAGAACTGCGGCAAACCAGAGACATGCTGcagGTGTTGTATGAGCGCCTCCCAGAGGTGGACAGCAGAAACATGATTCAGCAGATGAACAGCAGCCTGCAGACGCTGGAGAGCAACGTGGACAATGTTGTCAAAACCGCGGAGATGCTCGGAGCTGCACACCAGGAGGCGCGAGTCAGTCACGCGGTGGAGCTGATGTCTGTACACCTGGAGCATCTGCAGAAACGCCATGATACAGAGAGCGAGGAGATGCTGGAGGTCAGGAAGCTGCTGCACAGGAGGAAGGGGCGATTATACAGCGACTGCACGGATGACCGAGACCTGTTCAGACATTCATCGCAACAGCCAACGCGCCGCAGGGTTAGCATCACCTTACTCCCGACTCAGTCTGAGATGAAGCAGTTGGAAACGTTATTTCTGGACAACTGCGAATCTAATGTGGAAGTGAAGAAAACCCCTGATGAGCAAACAGACAAGCGACAGGAAGTAGTTCCCGATTCTCCCTTCATCAGTCTGAGTCAAGATGATGATGGTGACAGTAGTGTGTTTCAAAGTGTGACGCAGATCTCCCCATTGTGTCACCGCCGCCGCCTAAATTCTCAAATCGAGCCAGCAGGAAGTTCATTTGAGGGGGAGGAGCCTAACACTGAGCTATGTCTCACTGCAGAACGGCGCCCCCTGCTGTCCTGGAGGTCTTCGTACAGATGGATCGTCAGAATTACGTTCACTCTAATAATGCTGATGATAGTGGCtcttttatattaatttgttattatcagTGCAAATGATCAATGATTTGACATCATTTAATTTTATCGCaccattttatgtaaaaatgagcATCGCTAATGATACTGACTGATGAATTAGAGATCGTGAGGGAGTGTAGATCACTGTGTTTCCTGCAGGCGGCAGTATCGAGTCGCTCATTTACTCATTAGCAAATGAATATAACTGGATTATAGTTgacaagtgcatgtgtgtgtcctgAACACAGAGTGCAATTAAATATTCAGATGTAATATAGTCCTGAAACAGGTGCACAGCTAAAGCAGCTGATTAATGACATTAATTCACAGTATTTACATTCAGGGAGACACTGAGAAGCTTCAGGCGGATTGATTGAGGATTCAGTAGGTGCTGCTCGTCTGAATTGTTCAGctaataaatgcatttgtttt

Function

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-101 Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane.

Ensembl:

ensembl_id ENSDART00000149625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042008 lncRNA upstream 89897 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042007 lncRNA upstream 211097 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042006 lncRNA upstream 220267 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA upstream 220267 807453 ~ 808457 (+) True XLOC_019923
TCONS_00039739 lncRNA upstream 364870 662103 ~ 663854 (+) True XLOC_019919
TCONS_00039763 lncRNA downstream 12962 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039764 lncRNA downstream 20095 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00042009 lncRNA downstream 152115 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039777 lncRNA downstream 218969 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042010 lncRNA downstream 273996 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00039757 mRNA upstream 9972 997838 ~ 1018752 (+) False XLOC_019929
TCONS_00039758 mRNA upstream 10126 1006573 ~ 1018598 (+) False XLOC_019929
TCONS_00039755 mRNA upstream 32203 980290 ~ 996521 (+) False XLOC_019928
TCONS_00039756 mRNA upstream 34224 987788 ~ 994500 (+) True XLOC_019928
TCONS_00039754 mRNA upstream 41336 978867 ~ 987388 (+) False XLOC_019928
TCONS_00039762 mRNA downstream 6611 1049367 ~ 1069407 (+) False XLOC_019931
TCONS_00039765 mRNA downstream 49723 1092479 ~ 1109547 (+) False XLOC_019932
TCONS_00039766 mRNA downstream 59409 1102165 ~ 1107779 (+) True XLOC_019932
TCONS_00039767 mRNA downstream 68099 1110855 ~ 1120875 (+) True XLOC_019933
TCONS_00039768 mRNA downstream 80354 1123110 ~ 1127794 (+) False XLOC_019934
TCONS_00039759 other upstream 9572 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 221210 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039775 other downstream 207032 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 207483 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 280758 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039812 other downstream 534107 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 587930 1630686 ~ 1633449 (+) False XLOC_019968

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00156270_00161766.mRNA True 1329 mRNA 0.51 14 CI01000186 156183 ~ 161766 (-)