RNA id: CI01000186_00156270_00161766.mRNA


Basic Information

Item Value
RNA id CI01000186_00156270_00161766.mRNA
length 1329
RNA type mRNA
GC content 0.51
exon number 14
gene id CI01000186_00156270_00161766
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 156183 ~ 161766 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCGTGATGAATCGCAGGGCGTGAGGGTCAGCGAGAGGTTTCCAAAGGTTCCGCGTCCCAGCAAGCGGTCCGATTCCAGTCCGGATTCTGTCGTTTTTCTGTCTGTTTGTCTCCCGCTGACTCGGAGCGCAAAACAAAAGGGTTTAAGGGTTTGTGTGATTTATCAGCAGATGAATGAATCAGGCCTGTGTGATTATACTGGAATACTGGGAGACAGTGACGACAGCGATGACGATCCAAACTCAAAGAAGCTGCTGGCGGCTTCCTGGGAGAAGTTGTCCATCATGGACAGACTGGGATTAAAGAGCAGTGTGGAGATGACTGAGGACGAGGTCGAGAGCGCGTTTACCCAGTTTGCACTGGGGTTTCACTGCGACCAGTACACGCTGACCCAGCGGCTGCAGGCGGAGCGACACGACCGCGTCGTCGCAGAGGAGAATCTGCAGAGAGAACTGCAACAGACCAGAGAGATGCTGCAGGTGTTGTATGAGCGCCTACCAGATATGGATAGCAGAGAGATGCTGCAACAGATGAAGAACAACCTGCAGAAGCTGGAGAGCAATGTGGACGATGTTGTCAAAACAGCAGAGATGCTTGGAGCTGCACACCAGGAGGCGCGCGTCAGTCATGCCGTGGAGATGATGTCAGTACACGTGGAGCATCTCAAGAGACGTCACACTACAGAGAGTGAGGAGATGCTGGAGGTCAGGAAGCTGCTGCACAGGAGAAGGGGCCGATTACACAGTGACTCCACAGATGACCGAGACCTGTTCAGACATTCATCACAACAGCCAACACGCCGCAGGGTCAGCATCACATTACTCCCAACTCAGTCTGAGTTGAAGCATCTAGAAGCTTCGTTTCTGGAGAACTGCAGAACCAGTGCGAACGCAAAGAAAAAGCTTGACTGGAGACAGGAAGTAGCTCCCGCAGATTCTCCTGCGAACAGTCTAAACCAAGATGATGACGGCGAAAGCAGCGTGTTTCAAAGTGCGACGCAAGTCATGCCGATGTGCCGTCGCCGTCGCTATTCTCCAATCAAACCCAAAGAAAGTTCATTTGAGGGGGAGGAGTCCAACCCTGAGCTGTGCGTTTACATTCATGTATCTCGTGCCACGTCGGCGCCCCCTGTTGTCTTGGAGGACTCCGTGTGGATGGATTGTCAGAATGATATCACTCGTGTTTGGTCTGATGATGCTGATGGCGACTCTTTTATATGTAGTCATGAGTGTTTGTATTAAACACTGATGGTTTAGTGTTGTTATTTGATCTTGGAGGACTAGTGTAGGTATAAATAACCACTCTGTCATAACTGAATCCTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432620 lncRNA downstream 36015 119741 ~ 120168 (-) True G378456
TU432621 lncRNA downstream 37864 117796 ~ 118319 (-) True G378457
TU432618 lncRNA downstream 39313 114368 ~ 116870 (-) True G378455
TU432617 lncRNA downstream 43296 112664 ~ 112887 (-) True G378454
TU432616 lncRNA downstream 44687 111292 ~ 111496 (-) True G378453
TU432648 lncRNA upstream 54016 215782 ~ 216043 (-) True G378476
TU432559 lncRNA upstream 75372 240855 ~ 241071 (-) True G378399
TU432658 lncRNA upstream 139120 300886 ~ 301234 (-) True G378480
TU432659 lncRNA upstream 140445 302211 ~ 302489 (-) True G378481
TU432660 lncRNA upstream 160763 322529 ~ 322781 (-) True G378482
CI01000186_00144110_00151887.mRNA mRNA downstream 4296 143662 ~ 151887 (-) True CI01000186_00144110_00151887
CI01000186_00095947_00097088.mRNA mRNA downstream 59041 95645 ~ 97142 (-) True CI01000186_00095947_00097088
CI01000186_00087531_00090364.mRNA mRNA downstream 65692 87493 ~ 90491 (-) True CI01000186_00087531_00090364
CI01000186_00039365_00051758.mRNA mRNA downstream 103697 39303 ~ 52486 (-) True CI01000186_00039365_00051758
CI01000186_00011522_00015307.mRNA mRNA downstream 140876 11500 ~ 15307 (-) True CI01000186_00011522_00015307
CI01000186_00165206_00167364.mRNA mRNA upstream 3276 165042 ~ 167459 (-) True CI01000186_00165206_00167364
CI01000186_00175457_00185420.mRNA mRNA upstream 13433 175199 ~ 185420 (-) True CI01000186_00175457_00185420
CI01000186_00215443_00223579.mRNA mRNA upstream 53633 215399 ~ 223579 (-) False CI01000186_00215443_00223579
CI01000186_00238503_00238674.mRNA mRNA upstream 76704 238470 ~ 238674 (-) False CI01000186_00238503_00238674
CI01000186_00240507_00248051.mRNA mRNA upstream 78563 240329 ~ 248051 (-) False CI01000186_00240507_00248051
TU432622 other downstream 34758 120682 ~ 121425 (-) True G378458
TU432635 other upstream 30404 192170 ~ 193760 (-) True G378466
TU432571 other upstream 55710 217476 ~ 217536 (-) True G378411
TU432581 other upstream 83607 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432596 other upstream 199144 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432687 other upstream 234492 396258 ~ 396755 (-) True G378509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039760 False 1579 mRNA 0.48 13 NC_007133.7 1028724 ~ 1042756 (+)