RNA id: TU432635


Basic Information

Item Value
RNA id TU432635
length 440
RNA type TUCP
GC content 0.52
exon number 2
gene id G378466
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 192170 ~ 193760 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTATCTTCCTCAGGCATTGGCATGAAAACGGCCAGAGCTACACAGTTTGCAAAGATGGATACTTCCACTCTACGATGTTGATGCAGGCCTTGCGGAAGGGGTTCTTCAGCGTGAGGAAGAGGAGGGATCGCGCAGGCCGCGGGTTTCCACCTGTAGCCTGGAGCTTCTTGAGTTTCTCTCTCTGCTTCCTCTTGAGCGTCTCCTCATCCATGATGAAGGTGCTCATGGGTGCTTCACCGCCACCCTCCATGATCCGATCAGAACCAGAGCAGGAGGCGCAGGAATTCTGGAGATCAGGTACCCGGCTCAATAGTTCAGTGTCTTCAAGTGGTTGCTCTCAAGAGTCAAAAATGAACGTGTCCCCACCATCCGCTCTCTGTCTGTCTGTCCCTGAATCTATTTCTCTCTCTGCTCTTGTTTGGTTAGTACTGCAGCTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432620 lncRNA downstream 72002 119741 ~ 120168 (-) True G378456
TU432621 lncRNA downstream 73851 117796 ~ 118319 (-) True G378457
TU432618 lncRNA downstream 75300 114368 ~ 116870 (-) True G378455
TU432617 lncRNA downstream 79283 112664 ~ 112887 (-) True G378454
TU432616 lncRNA downstream 80674 111292 ~ 111496 (-) True G378453
TU432648 lncRNA upstream 22022 215782 ~ 216043 (-) True G378476
TU432559 lncRNA upstream 43378 240855 ~ 241071 (-) True G378399
TU432658 lncRNA upstream 107126 300886 ~ 301234 (-) True G378480
TU432659 lncRNA upstream 108451 302211 ~ 302489 (-) True G378481
TU432660 lncRNA upstream 128769 322529 ~ 322781 (-) True G378482
CI01000186_00175457_00185420.mRNA mRNA downstream 6750 175199 ~ 185420 (-) True CI01000186_00175457_00185420
CI01000186_00165206_00167364.mRNA mRNA downstream 24711 165042 ~ 167459 (-) True CI01000186_00165206_00167364
CI01000186_00156270_00161766.mRNA mRNA downstream 30404 156183 ~ 161766 (-) True CI01000186_00156270_00161766
CI01000186_00144110_00151887.mRNA mRNA downstream 40283 143662 ~ 151887 (-) True CI01000186_00144110_00151887
CI01000186_00095947_00097088.mRNA mRNA downstream 95028 95645 ~ 97142 (-) True CI01000186_00095947_00097088
CI01000186_00215443_00223579.mRNA mRNA upstream 21639 215399 ~ 223579 (-) False CI01000186_00215443_00223579
CI01000186_00238503_00238674.mRNA mRNA upstream 44710 238470 ~ 238674 (-) False CI01000186_00238503_00238674
CI01000186_00240507_00248051.mRNA mRNA upstream 46569 240329 ~ 248051 (-) False CI01000186_00240507_00248051
CI01000186_00259516_00260745.mRNA mRNA upstream 65656 259416 ~ 261189 (-) True CI01000186_00259516_00260745
CI01000186_00261713_00270433.mRNA mRNA upstream 67663 261423 ~ 270510 (-) True CI01000186_00261713_00270433
TU432622 other downstream 70745 120682 ~ 121425 (-) True G378458
TU432571 other upstream 23716 217476 ~ 217536 (-) True G378411
TU432581 other upstream 51613 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432596 other upstream 167150 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432687 other upstream 202498 396258 ~ 396755 (-) True G378509
TU432574 other upstream 292036 488357 ~ 488483 (-) True G378414

Expression Profile