Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00039763 |
| length | 841 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 3 |
| gene id | XLOC_019931 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 1049367 ~ 1069407 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018105 | peptidyl-serine phosphorylation | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0004683 | calmodulin-dependent protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-7594 | Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG). |
| ensembl_id | ENSDART00000140925 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042008 | lncRNA | upstream | 116891 | 923511 ~ 938827 (+) | True | XLOC_019927 |
| TCONS_00042007 | lncRNA | upstream | 238091 | 811600 ~ 817627 (+) | True | XLOC_019924 |
| TCONS_00042006 | lncRNA | upstream | 247261 | 803504 ~ 808457 (+) | False | XLOC_019923 |
| TCONS_00039751 | lncRNA | upstream | 247261 | 807453 ~ 808457 (+) | True | XLOC_019923 |
| TCONS_00039739 | lncRNA | upstream | 391864 | 662103 ~ 663854 (+) | True | XLOC_019919 |
| TCONS_00039764 | lncRNA | downstream | 4298 | 1062851 ~ 1066844 (+) | True | XLOC_019931 |
| TCONS_00042009 | lncRNA | downstream | 136318 | 1194871 ~ 1195348 (+) | True | XLOC_019937 |
| TCONS_00039777 | lncRNA | downstream | 203172 | 1261725 ~ 1267820 (+) | True | XLOC_019938 |
| TCONS_00042010 | lncRNA | downstream | 258199 | 1316752 ~ 1364861 (+) | True | XLOC_019944 |
| TCONS_00042011 | lncRNA | downstream | 258908 | 1317461 ~ 1329150 (+) | False | XLOC_019943 |
| TCONS_00039760 | mRNA | upstream | 12962 | 1028724 ~ 1042756 (+) | False | XLOC_019930 |
| TCONS_00039757 | mRNA | upstream | 36966 | 997838 ~ 1018752 (+) | False | XLOC_019929 |
| TCONS_00039758 | mRNA | upstream | 37120 | 1006573 ~ 1018598 (+) | False | XLOC_019929 |
| TCONS_00039755 | mRNA | upstream | 59197 | 980290 ~ 996521 (+) | False | XLOC_019928 |
| TCONS_00039756 | mRNA | upstream | 61218 | 987788 ~ 994500 (+) | True | XLOC_019928 |
| TCONS_00039765 | mRNA | downstream | 33926 | 1092479 ~ 1109547 (+) | False | XLOC_019932 |
| TCONS_00039766 | mRNA | downstream | 43612 | 1102165 ~ 1107779 (+) | True | XLOC_019932 |
| TCONS_00039767 | mRNA | downstream | 52302 | 1110855 ~ 1120875 (+) | True | XLOC_019933 |
| TCONS_00039768 | mRNA | downstream | 64557 | 1123110 ~ 1127794 (+) | False | XLOC_019934 |
| TCONS_00039769 | mRNA | downstream | 65320 | 1123873 ~ 1130263 (+) | True | XLOC_019934 |
| TCONS_00039761 | other | upstream | 15969 | 1039548 ~ 1039749 (+) | True | XLOC_019930 |
| TCONS_00039759 | other | upstream | 36566 | 1018601 ~ 1019152 (+) | True | XLOC_019929 |
| TCONS_00039750 | other | upstream | 248204 | 803504 ~ 807514 (+) | False | XLOC_019923 |
| TCONS_00039775 | other | downstream | 191235 | 1249788 ~ 1262272 (+) | False | XLOC_019938 |
| TCONS_00039776 | other | downstream | 191686 | 1250239 ~ 1251660 (+) | False | XLOC_019938 |
| TCONS_00039784 | other | downstream | 264961 | 1323514 ~ 1329146 (+) | True | XLOC_019943 |
| TCONS_00039812 | other | downstream | 518310 | 1576863 ~ 1577746 (+) | True | XLOC_019963 |
| TCONS_00039818 | other | downstream | 572133 | 1630686 ~ 1633449 (+) | False | XLOC_019968 |
