XLOC_019937 (eps8l3a)


Basic Information

Item Value
gene id XLOC_019937
gene name eps8l3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1186866 ~ 1203405 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039774
GATCAGATCAGACTTTGCTCCTGCAGTGTGTGGGAGCGGCTGCTGCTGTTCCTCTGCTTCAGAATGAGCGAAAACCCTGAAAACACACTCTGAGGATctcaaactacacacacacacagttcaggaATACCGCGCGGAGTTTTGAGGTGCTGAAGTGATGCTGCGGGATTCGAGTCCGTTCGGCTGGTCCGGCGGTTACGCTGAATCACTCCGCTCCAGTGTAACAGCAGCGGATGAGTCGTCTTCAGATGTGTTGGATTTATCCAGACCCAGCGCTAAATCCATTTACCATCAGAGGAAGGAATATGCAGAGTCTGTGAACAGGCAGATGCATCAGTTCCAGCACCGCGTGGAGCATCTGTTCACCTGTGAGCTGGACGGTCAGCAGCTCTGCGATGTGGATGACTGTCTGGAGCGGCTGAAGTATCTGGATGCCACAGGTCGGGTTTGGGGTCAGGATGTCATTCTGGAGGTGCAGGATGCAGCGCTGCGACTCGCCGACATTGAGACCAGGGAGGTGCTGGAGTCCTGGCCGCTGAGCTGCGTTCTGGAGCTGAAGGCCGTTCTGGATGAAAGCGTTTACGACTCGCTGCTGACCGTCTCAGTGCAGGAACGAGGCAGTCGAACCGTCAGCGTCTTCATGTTCCAGAGCGAAACTCTCAGGGCAGATTATCTGAAGAAGGACCTCCAGCGGCTCCTGCAGAACAGCAGAGATGACCCCAGACAGAGTAACAGCAGTAAAGCCGCTGTAGGAAACATCACGCAGAAAAACTCCAGACGAGCATCTCCTCCACCAGAGCTGATCCTCCAGAGACCTGCTGAACGCTGGGCCGCGCCAGACTATGATGACAGTCCAGTCGCGACTCCACCCACTTCCAGAAACAACTCCACCCATACTAAAGTAGTGGCCCCACCTCCTCAAACAAAAACTCCACCTCACAAACAGACCACACCCCCTCGTACAGAAGAACCGCCCGTCAGAGAGGCCCCGCCCCCTCAGAAGCCATATACGGAGCGTGAGAGGAACGTGGATATCCTGAATCACCTTATTAACGACATCGAAGCGTTCGTTGGCAGACTGACGGCTGTGGCACCAAAGATggacaagaagaagaagaagcagaaaaAGCAGAAAGCTGTGAAGGGAATGCCGTCAGATGAAGAGTTCACCGTCTGTCTGAGGAAGATCAAGATGGCCTTCAACCTGCTGGGCAAACTCCAGGGGAAGATAGACAACCCCAGCGCTGCTGAACTCACACACTGCCTGTTCTCCATACTGGAGCTGgtggtgTATCACTGTAACGAAGATCTTCCTCCATCAATCGTGGCTCCTCTCTTCGAGCCGGAGTGTGTGGTGTTTCTGAGTGAGGAGGCCACACCGGAGGAAGATCATCTGTGGCAGTCACTGGGAGACGCCTGGAACATCCCAAGcaCTAAGTGGccggaggatgatgatgatattcCCACATTCACGCCGGTGTTTGATGATGGTTGGGAGCCGCCGGCTATCAGGAACCCCGAGCCCACATATAAACAAATCAGCAAGCAGGAGCCTGCATATAAATCAATCAGCAAAGAAGACACGCCACGAACATCTGTGGCTCGACAGATGagccGTACAGCAGAGCCGGAGCTTGAGCCAGAGCAGAGtgaGCTGCCGGCGAGTTTCATGCGAGCCATATTTGATTTCTCAGCTCGTAACGACAGAGAGCTTTCCATCACTAAAGGAGAAGAGCTGCAGttgCTGGACATGTCGAAGAAGTGGTGGAAGGTGAAGAATCAGAGAGGGCAGATCGGCTTCGTCCCCAATAACATGCTTCAGCAGCAGAATcaggaggaggagaaagagGAAGCTCCGTCTGCTCCTGCGCTCAACAGGAAGTCCAGGCCGGAGGAGGTGCGGGCATGGCTGGAGCACAAGGGGTTCAGTAAAATtacgGTTCGCTGTCTAGGGGGCGTCAGCGGCTCGATGTTGTTGGGAATGACACGCGACGAACTCAAAACGATCTGTCCTGAAGAAGGCGGACGTGTTTTCTACCAGCTGCAGAACATCAAGTCTGCGCTCGCGATGGCCAGTGAAGTGAGACCGATGATTTGAACTACGTCAACACATCGCTAACAGATGACAATGAAAAAACGATGCGGACTTcgttatatttatttgtattttaacgCTGATGTTGATACCAAAAAACTGCACAGAGACTCAGGAGATTGAACACGCATGCTTTATTGAAATCAACACTCGTCTGGACAGACTCATTCGTCATTCTCGCCAAAAATAGATTCGTACTGTTATTTGCGAGCATTGGCTTGCTAGCGTGTTGTACGTCATGCTTTGCTCTTGGTTAATGTGCTAATTTCTATAAATCATGCTATTCCG
>TCONS_00042009
AGTCGCGACTCCACCCACTTCCAGAAACAACTCCACCCATACTAAAGTAGTGGCCCCACCTCCTCAAACAAAAACTCCACCTCACAAACAGACCACACCCCCTCGTACAGAAGAACCGCCCGTCAGAGAGGCCCCGCCCCCTCAGAAGCCATATACGGAGCGTGAGAGGAACGTGGATATCCTGAATCACCTTATTAACGACATCGAAGCGTTCGTTGGCAGACTGACG

Function

symbol description
eps8l3a Predicted to enable actin binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of ruffle assembly; and regulation of Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in ruffle membrane. Human ortholog(s) of this gene implicated in hypotrichosis 5. Orthologous to human EPS8L3 (EPS8 like 3).

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:1900029 positive regulation of ruffle assembly biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-460 Predicted to enable actin binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of ruffle assembly; and regulation of Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in ruffle membrane. Human ortholog(s) of this gene implicated in hypotrichosis 5. Orthologous to human EPS8L3 (EPS8 like 3).

Ensembl:

ensembl_id ENSDARG00000101979

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039774 False 2383 mRNA 0.52 20 1186866 1203405
TCONS_00042009 True 229 lncRNA 0.54 2 1194871 1195348

Neighbor

gene id symbol gene type direction distance location
XLOC_019936 irf6 coding upstream 4701 1170294 ~ 1182165 (+)
XLOC_019935 GUCA1A coding upstream 39877 1137997 ~ 1146989 (+)
XLOC_019934 si:ch1073-181h11.2 coding upstream 56603 1123110 ~ 1130263 (+)
XLOC_019933 si:ch1073-181h11.1 coding upstream 65991 1110855 ~ 1120875 (+)
XLOC_019932 guca1e coding upstream 77319 1092479 ~ 1109547 (+)
XLOC_019938 CU570769.1 coding downstream 46383 1249788 ~ 1267820 (+)
XLOC_019939 si:ch73-138e16.2 coding downstream 73275 1276680 ~ 1282346 (+)
XLOC_019940 si:ch73-138e16.3 coding downstream 81777 1285182 ~ 1290139 (+)
XLOC_019941 si:ch73-138e16.4 coding downstream 88246 1291651 ~ 1294899 (+)
XLOC_019942 si:ch73-138e16.5 coding downstream 97182 1300587 ~ 1307143 (+)
XLOC_019927 NA non-coding upstream 248039 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 369239 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 877662 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 899677 219167 ~ 287189 (+)
XLOC_019903 NA non-coding upstream 1130126 53914 ~ 56740 (+)
XLOC_019944 NA non-coding downstream 113347 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 173926 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 373458 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 446723 1650128 ~ 1653938 (+)

Expression


Co-expression Network