XLOC_019941 (si:ch73-138e16.4)


Basic Information

Item Value
gene id XLOC_019941
gene name si:ch73-138e16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1291651 ~ 1294899 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039780
AGTATGAGGTGGAGAGTAAATCCATCGGAGCGCTGCTGAATGACAAACATTTCCGTTTAATATCACTAATTTCACGGGTGATTTGAGTCTCTTCAAGTCTACAAGTGAAGACGACCATCAGGAAGAAGTGAAATCTGAAAGACGAGatgaagatgagtgatccagaaccctgcagaattaaagaggaggaggatgaggagcAGACAGACTTTATTGAAGAGGATGACGAGGAGACGTTTGTGAAAGCTGAGAAAATCCCTCATTTATTGACTGAAggtgtttttttaatgcaaagaGGAGACAAGTGTTTCACCTgcactgagtgtgggaagagtttgagATCCAAACAAAGTCTCCAGtttcacatgaggattcacactggagagaagccgtacacatgcactgagtgtgggaagagCGTCAGACAATCATCGGCACTTAAAATACACATGCgcatccacactggagagaaaccgcacAAGTGTGATCAATGCGGCAAGACATTTTTGATTCATTCACACCTGCAGAACCATCTGAGAGTTCACACTAAAGAGAAACCGTATTCATGCTGtgagtgtgggaagagctttGCAACGCAGTCCAGTTTACGaaaacatcagaagatccacactggagtgaAAGAGCACGTGTGCTTGGAGTGtgggaagacttttattacagctcagGCTTTGAAGaagcaccagaggattcacactgaggagaaaccgtacaagtgttcataCTGCGACAAGAGCTTCAGGCGGACAGGAGACCTGAAAGTGCAtgagaggatccacactggagagaaaccgtacacatgtgatcagtgtctgAAGAGTTTCAC

Function

symbol description
si:ch73-138e16.4 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005694 chromosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0043035 chromatin insulator sequence binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-203 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome.

Ensembl:

ensembl_id ENSDARG00000102363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039780 True 844 mRNA 0.45 3 1291651 1294899

Neighbor

gene id symbol gene type direction distance location
XLOC_019940 si:ch73-138e16.3 coding upstream 1512 1285182 ~ 1290139 (+)
XLOC_019939 si:ch73-138e16.2 coding upstream 9305 1276680 ~ 1282346 (+)
XLOC_019938 CU570769.1 coding upstream 23831 1249788 ~ 1267820 (+)
XLOC_019937 eps8l3a coding upstream 88246 1186866 ~ 1203405 (+)
XLOC_019936 irf6 coding upstream 109486 1170294 ~ 1182165 (+)
XLOC_019942 si:ch73-138e16.5 coding downstream 5688 1300587 ~ 1307143 (+)
XLOC_019943 si:ch73-138e16.6 coding downstream 18147 1313046 ~ 1376970 (+)
XLOC_019944 NA coding downstream 21853 1316752 ~ 1364861 (+)
XLOC_019945 CU207221.2 coding downstream 35578 1330477 ~ 1333565 (+)
XLOC_019946 znf45l coding downstream 57293 1352192 ~ 1361148 (+)
XLOC_019927 NA non-coding upstream 352824 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 474024 811600 ~ 817627 (+)
XLOC_019910 NA non-coding upstream 982447 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 1004462 219167 ~ 287189 (+)
XLOC_019947 BX322657.1 non-coding downstream 82432 1377331 ~ 1384069 (+)
XLOC_019963 AL954741.1 non-coding downstream 281964 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 355229 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 365288 1660187 ~ 1665471 (+)

Expression


Co-expression Network