RNA id: TCONS_00039771


Basic Information

Item Value
RNA id TCONS_00039771
length 594
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_019935
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1137997 ~ 1146989 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgggGAACGCGCCCGGTACATCAGTGGAGGAGCTCAGCGCCTGTGAGTCTCACCAGTGGTACCGAAAATTCATGACCGAGTGTCCGTCCGGCCAGCTCACCTTCTACGAGTTCAAGAAGTTCTTCGGCCTCAAGAATCTGTCAGAGAAATCCAACGAATACGTCATGACCATGTTCCAGACGTTCGATATGAATGACgatgGCTGTATTGATTTCATGGAGTATGTGGCGGCTCTGAGTCTGATCCTGAAAGGCGGTGTTCAGCAGAAGCTGCGCTGGTATTTCAAGCTCTACGATGTGGACGGCAGCGGCTGCATCGACCGCGAGGAGCTGCTGCTCATTGTTAAGGCCATTCGAGCCATTAATGGAGTCGAGCAGGAGGTTTCAGCTGAAGAGTTTACCAACATGGTGTTTGAAAAGATCGACCTCAATGCAGACGgagtgtTGACTATGGATGAGTTTATGGAGGGCATTCAGGCAGACGAGTATCTCTCCACCATGCTGACTCAGAGTCTGGATCTCACACACATCGTCAAAAAAATCTACAGCGAGATCCACTGTGAtGGCACTGACTCCAGACCAGCAcacagatga

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011128-5 Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

Ensembl:

ensembl_id ENSDART00000183226

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039764 lncRNA upstream 71173 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00039763 lncRNA upstream 79464 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00042008 lncRNA upstream 199190 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042007 lncRNA upstream 320390 811600 ~ 817627 (+) True XLOC_019924
TCONS_00039751 lncRNA upstream 329560 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042009 lncRNA downstream 47882 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039777 lncRNA downstream 114736 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042010 lncRNA downstream 169763 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA downstream 170472 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039787 lncRNA downstream 230342 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00039769 mRNA upstream 7754 1123873 ~ 1130263 (+) True XLOC_019934
TCONS_00039768 mRNA upstream 10223 1123110 ~ 1127794 (+) False XLOC_019934
TCONS_00039767 mRNA upstream 17142 1110855 ~ 1120875 (+) True XLOC_019933
TCONS_00039765 mRNA upstream 28470 1092479 ~ 1109547 (+) False XLOC_019932
TCONS_00039772 mRNA downstream 23305 1170294 ~ 1177638 (+) False XLOC_019936
TCONS_00039773 mRNA downstream 23306 1170295 ~ 1182165 (+) True XLOC_019936
TCONS_00039774 mRNA downstream 39877 1186866 ~ 1203405 (+) False XLOC_019937
TCONS_00039778 mRNA downstream 129691 1276680 ~ 1282346 (+) True XLOC_019939
TCONS_00039779 mRNA downstream 138193 1285182 ~ 1290139 (+) True XLOC_019940
TCONS_00039761 other upstream 98268 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 118865 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 330503 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039775 other downstream 102799 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 103250 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 176525 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039812 other downstream 429874 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 483697 1630686 ~ 1633449 (+) False XLOC_019968

Expression Profile

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