RNA id: TCONS_00039778


Basic Information

Item Value
RNA id TCONS_00039778
length 820
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_019939
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1276680 ~ 1282346 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTGCAGTTTAGTGTATATTATCACTGAAGTTACGGGTGTTTTGCGTCTTTTCAGTTCTACAAGTAAAGACGAGTGTCAGATCATCAGGAAGAAGTGAAATCTgaaagatgagtgatccagaaccctgcagaattaaagaGGAAGAGGAGCCCTGCAGAATTAAAGAGGAAGAGACTGAAGAGCATATAGACTTTATTGAAGAAGACGAGGATAATGAGGATGATAAATTTGTAAAAGCTGAGAACACCCCTCATTTATTGACTGAAGgtattgttttaaagcaaaaagaCCAGAAGTGTTTCCCCTGCACTGAATGTGGAATGAGTTTGACATCCAAACAGGTTCTAAAGcgtcacatgaggatccacactggagagaaaccctacacatgcactcagtgtgggaagagtttcagtcgATTGGGAACCCTTAATGTGCACCGgctgattcacactggagagaaaacacacacgtGCGATCAGTGCGGGAAAACATTTTTGACTCACTCACACCTGGAGGTCCATCATAGAGTTCACACTAAAGAGAAACCGTATTCATGctctgagtgtgggaagagttttaaatACCAGTCAAGTTTAAGAAAACATCAGACGATCCACGCTGGAGTGAGAGAGCATGTGTGCTTTATGTGTCAGAGGACTTTTATTACGGCTCAGGCCTTGAAGAATCAccagatgattcacactggagagaaaccgtacatgtGTGTTCTGTGTCTGAAGACTTTCACACAGTTGTCGCATGTGAAGGGACACATGAAattccacactggagaaaagcagcACACGTGATGATC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-201 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF530 (zinc finger protein 530) and ZNF572 (zinc finger protein 572).

Ensembl:

ensembl_id ENSDART00000169230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039777 lncRNA upstream 8860 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 81332 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039764 lncRNA upstream 209836 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00039763 lncRNA upstream 218127 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00042008 lncRNA upstream 337853 923511 ~ 938827 (+) True XLOC_019927
TCONS_00042010 lncRNA downstream 34406 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA downstream 35115 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039787 lncRNA downstream 94985 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00041847 lncRNA downstream 377841 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 444704 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00039774 mRNA upstream 73275 1186866 ~ 1203405 (+) False XLOC_019937
TCONS_00039773 mRNA upstream 94515 1170295 ~ 1182165 (+) True XLOC_019936
TCONS_00039772 mRNA upstream 99042 1170294 ~ 1177638 (+) False XLOC_019936
TCONS_00039771 mRNA upstream 129691 1138017 ~ 1146989 (+) True XLOC_019935
TCONS_00039770 mRNA upstream 129710 1137997 ~ 1146970 (+) False XLOC_019935
TCONS_00039779 mRNA downstream 2836 1285182 ~ 1290139 (+) True XLOC_019940
TCONS_00039780 mRNA downstream 9305 1291651 ~ 1294899 (+) True XLOC_019941
TCONS_00039781 mRNA downstream 18241 1300587 ~ 1307143 (+) True XLOC_019942
TCONS_00039782 mRNA downstream 30700 1313046 ~ 1322968 (+) False XLOC_019943
TCONS_00039783 mRNA downstream 35007 1317353 ~ 1376970 (+) False XLOC_019943
TCONS_00039775 other upstream 14408 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 25020 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 236931 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 257528 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039750 other upstream 469166 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039784 other downstream 41168 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039812 other downstream 294517 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 348340 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 367782 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 378069 1660415 ~ 1661346 (+) False XLOC_019971

Expression Profile

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