RNA id: TCONS_00039752


Basic Information

Item Value
RNA id TCONS_00039752
length 1797
RNA type mRNA
GC content 0.52
exon number 13
gene id XLOC_019925
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 835728 ~ 856886 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTTGAACgtgtgtgtttttcagtcagcgcgtgtgtgtgtgagagaaacagCAGCATCACAGACAGAGATGAGCACAGAGAAGTGGAGGACAGGACGACAAATACAACAACTACACACTCCAACCGACAACGTTGATCGCAGTGCCATGAAGAAGATCAGCTCCATGTTCTCAGCATTACAGGAGAAGTTCCAGAGAGCAAAGGCCGGAGCCCCTACCCCCGCGGCCGTGGCGCCCCCTGCTGGACGGGAGAGTCACTGTGGTCTGAGATTCTTTGAGTATCTGCTGGTGGTCAGTCTGAGGAAGAGGAGCAGCGGGGTGGGGTACGAGCCACAGGTCACTTACCAGTTCCCTAAGcgtgAGGTGATGGGGCGGCTGCAGCGCGAGCAGGAGGAGAAGAGCATGAAGGCGGCTCATCTGTTCTGCTTCCCTGAGGGAGTCCACTGGGCCCCAGTGACAGAGtacagcagCGAGACGTTCTCCTTCGTTCTGACTGAAGTGGACGGCAGCCGCAGGAACGGCTACTGCAGGAGGCTGCTGCCGGCAGGTAAAGGTGCTCGTCTTCCTGAAGCGTACTGCATCATCAGCCATGTGGCCTGTTTCGGCCTCTTCTCAAAGatctttGATGAGGTGGAGAAGCGCCGGCAGATCTCCACAGCCATGATTTACCCGTTCATGCAGAGTCTGCGGGAGGCACCGCTGCCTTCACCCGGCAGCACCGTCAGCATCAGCAGCTTCATCCCGGACGCCGGCACACagATCATCCGGCTGACGCGGCCTGCAGACTCCTGGCTGGAGCATGTGGATTTCACTGCGCTTTTCAGCCGTCTGAACGATGAGGAGCTGCTGCTGGTGTTCACCGCTGCTGTGCTGGAGCGACGAATCATCTTCATCTCAGAGGAGCTCAgcactCTCTCGCAGGTTCTTCATGCTGTAGCAGCGCTCCTGTATCCATTTGTGTGGCAGCACACGTTTATATCAATCGTTCCTTCAGTTCTGATCGACGTTTGTGAAGCACCGACTCCATACCTGCTGGGTGTTCAGAAGAGCATGATGGGGCTGATCACGGACCACAGCGAcGTGATGATTGTTGATCTGTCGACTGGAGCGCCAACTAAATTCATCACAAGAATTGGAGATGAGGAGTCTCTGCTGCCGCTGAAGCTGAAGGAAGAGCTGCTGTCGGGATTGTCCGCGCGCACGCACCACGCCTCTACAGAGCAGCTGAACCGGCTGGTGTCAGAGGCCTTCCTGTCCGTATTCGTCAAGACTGTCGGCCATTTCTCGGAGCACATTAAGCGTGGCGGGAAACCCCGGCAGTTCCAGAAGAAGAGCTTCCTGAAAGCAGTGGAAAACAAAACCTACAGCAGCTTTGTTAAGCTCTTCATCCAGACGCAGATGTTTGACCTGTTCATacaggaagaggaaacacaatcTAACCCTAATGGCTTCTTTCACAGGAAGGTGAAGGAACATCGCGACAGGATGAAGCAGGAGAAGGCGAAGGCTGGGTGGGTGCGAGGTGTGGTGATTTGAgcacttttattttgacacaatCGCCTGAACAAATCTAATGCTGATTATTGTTTtaccataataaaatattaagctATATCCGAAATGCTGCTCGTTCGAAAATCTCAGCTCATATTTTCAACAATATCCGAAGAACAAAAACGAGAAACTGTGTGTAGTATTATTTCCAGTCAAATCTGACTTCTGTCTGTGTGTAATCGTCATTAGTGTGTTGCAGTATTGTAATAAGTATTACAATaaagtttgttttaaaatatgaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-34 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytosol and nucleoplasm. Orthologous to human DENND2D (DENN domain containing 2D).

Ensembl:

ensembl_id ENSDART00000003325

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042007 lncRNA upstream 18101 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042006 lncRNA upstream 27271 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA upstream 27271 807453 ~ 808457 (+) True XLOC_019923
TCONS_00039739 lncRNA upstream 171874 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042005 lncRNA upstream 526524 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042008 lncRNA downstream 66625 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039763 lncRNA downstream 198832 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039764 lncRNA downstream 205965 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00042009 lncRNA downstream 337985 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039777 lncRNA downstream 404839 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00039746 mRNA upstream 26446 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039745 mRNA upstream 26446 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039749 mRNA upstream 26827 797105 ~ 808901 (+) False XLOC_019923
TCONS_00039744 mRNA upstream 26847 786556 ~ 808881 (+) False XLOC_019923
TCONS_00039748 mRNA upstream 27870 789828 ~ 807858 (+) False XLOC_019923
TCONS_00039753 mRNA downstream 26792 883678 ~ 898645 (+) True XLOC_019926
TCONS_00039754 mRNA downstream 121981 978867 ~ 987388 (+) False XLOC_019928
TCONS_00039755 mRNA downstream 123404 980290 ~ 996521 (+) False XLOC_019928
TCONS_00039756 mRNA downstream 130902 987788 ~ 994500 (+) True XLOC_019928
TCONS_00039757 mRNA downstream 140952 997838 ~ 1018752 (+) False XLOC_019929
TCONS_00039750 other upstream 28214 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 161715 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 182662 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 392902 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 393353 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 466628 1323514 ~ 1329146 (+) True XLOC_019943

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU432559 True 217 lncRNA 0.46 1 CI01000186 240855 ~ 241071 (-)