RNA id: TCONS_00039746


Basic Information

Item Value
RNA id TCONS_00039746
length 3460
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_019923
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 786556 ~ 809282 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTGTGTGTTGTGTTGGTCAGCTGTGGGTGATGTCGGTGAACTCGGTGCACTGGTTCCGGAAGGGTCTGCGTCTGCATGATAACCCTGCGCTGCTGGAGGCTCTGAATGGGGCCGACACACTGCGCTGCGTTTACTTTCTGGACCCCTGGTTCGCTGGGGCCTCCAACCTGGGCGTCAACCGCTGGAGGTTTCTCCTTCAGAGTTTGGAGGATCTGGACGCTAGTCTTCGTAAACTAAACTCATGCCTGTTCGTGATTCGCGGTCAGCCGGCCGACATCTTCCCACGACTCTTCAAGGAATGGAAGGTTTCTCGATTGACATTCGAGTTCGACTCGGAGCCGTTCGGGAAGGAGCGAGACGCGGCGATAAAGAAACTAGCGTGTGAAGCAGGAGTGGAGGTGATCGTGAAGATCTCGCACACGCTCTACGATCTCGACAGGATCATCGAGCTGAACGGCGGTCAATCTCCGCTAACGTACAAACGCTTCCAGACACTAGTGAGCAGCATGGAGCCGCCCGACTCGCCCCTCGCCTCGCCAGACAGAGGCATGATGGGAAAATGTGTGACGCCCATCAGCGAAAACCACCGTGACAAATACGGCGTCCCCCTGCTGGAGGAACTagGGTTCGACACTGAGGGTTTGGCTCCGGTTGTTTGGCCCGGTGGAGAATCAGAAGCTCTGAAGCGAATGGAGCGGCACCTCGGACCGGACTCTACTGTGGCGTGGCAGGAGAACTTTGAGCGACCGAAGATGAACGCTAGTCCGCTAATGGCTAGTCCGCTAGGTTTGAGTCCGTACCTTCGCTTCGGCTGCCTGTCCTGCCGCCTGTTCTACTGTAAACTCACTCAGCTCTACAAGAAGGTGAAGAAGAACATGAACCCGTCCATCTCTCTGTACGATAAGATCTTATGGCGGGAGTTTTTCTACACGGCCGCGACCAACAACCCACGCTTCGACCGCATGGAGGGAAACCCCATCTGCATCCGCATCCCGTGGGACAGGAACGCGGAGGCGCTAGCAAAGTGGGCGGAGGCTAAGACGGGTTTCCCCTGGATCGACGCCATCATGATGCAGCTACGTCAGGAGGGATGGATCCATCATCTGGCGCGTCACGCTGTGGCCTGTTTCCTGACGCGCGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTCGAGGAGCTGCTGCTGGATGCGGACTGGAGTGTGAACGCGGGCAGCTGGCTCTGCCACTCCTGCAGCTCGTTCTTCCAGCAGTTCTTCCACTGTTACTGTCCTGTGGGGTTCGGACGCCGCATCGACCCCAACGGAGACTTCATCAGACGTTACTTACCTGTCCTACGAGATTTTCCAGCCAAGTACATTTATGACCCCTGGAACGCCCCGCACGACGTGCAGCTAGCCGCTAAATGCGTGATCGGTGTGGACTATCCCAAACCCATGGTGAACCACGCGGAGGCCAGTCGGCTAAACATCGAGCGGATGCGGCAGATCTACCAGCAGCTGTCAAGATACCGCGGACTCAGTCTGCTTGCCACTGTTCCATCCAACCACATAGAAGACGCAGCAGCAAATGTAAACCGTGGAGCAATGGCGCCCCCAACACGCCGGAAGACACGAAACGACGCATCGTCTTATAGGGTCAGGAGAGAGCAACCTGGACCAAGCGGAGCCAAACATCGACACCGACACTCACTCAGCCACCGCCCATCGCCGTACGCCACTCAGAGTGAACTGACGGACCACAACCACGAGTTTGCCGTTCCACAACAACCagGGCGTGTGAGTTGGCCGAATGTGGGCGGGACTGGAAAAAAAGAAGGGGAGGCTGAGCACAACTGTTGCCGTGGTGACAATGGCCCCTCCTCCTCGGCACTGAAAGCGCAGCAGCAAGACAACGAGGTTTGCAGAAAATGAAAACTGTGAGGATATTGGTAATTTAAAATTGAACTTCACTTAACGTAATTAACTCCTGTTTGTTTCAGAAGAGGCGGGAAGATGCAGAGGGTGTGGCCTTCTCTACCTAAGCCCCACCCACCAATGGATTCGCTAAATGTGTTATAACTTCCCTTTGCGTGTTAAACAGTTAAACACGACTCGTCCAGATTGCGTCTAAacaattttaatgtttataaaacGAATTTTAAgaacttaaccaacaaatatatttatttttaaaaatctgatgtaCATATGTCTTTATGACATTAAACTACAACTATTTAATTAAAAGTCCCTCCACACCAAATGCCAAGAGAATTGTCTGTCTATTACAGCAAAACGAATATTCGTCAGGCTAAATGAAAAACCGATGTTTTATTAACAGAATATTAAAACGATTGTTAAACTTTGGTGTTAAAcgtaattttaatgtaatataaattaaattaagtatgaTTTACACTTTTATAATCCCAAATGCTGATTTTAAAAATCCGTAAATACTGTACTTAAGATGCTAAATGTACAAAGATACGAATGTTTATCAGGCTGAACGAAAAAAGCCACATTTTTCGATATTTGTATTAATATGTGTACTCCATGAACTTGTGAACCAAAGCTCAAGTTTTATTGGTCGCCGCTTTTTTTGTCAGTTTATATTTTAATTCGCTGTGAATGGACCTTAAAGGTGAATCGCAAACAGCCGAAGTACATGCGTTACGCCACATTTAAACGAATCCAGCAGAGTTTTCACAGCAGCCTCGCCTGTACAAACTGTTTCCATTGTGGTCACATGATGACCTTTGGGTCCAAGCGCTTGTAACTGTACCACAGATAAACGAATGTGTCATcttgttttcattgtttttgcACAAATCTAGTGTAGATTGAGCTCCAGATGTTTGTCTTCCATCACTGCACACTGCTATTATTTTTAGCATTTCCATGTATATGACGGCTGTATCTCACAGAGCTGTACATTTGTTTTCCGATTGTGTTGTCATTTTCTACAGAGTATTTGTAGCTGTTTTGAACTGTAAATAGAAGTCTGATATTTATCGTACCAGCATTGGATTCTTAGTCTCTGTGTGGAACTTCATTGTTcagctaataaaaaaaatgtaaacaatttgcGTGCTTATTTGTCTGTGTTTATACATATCGCatatttcattcatgcattcattcattttccttcggcttagtccctttattcatcaggggttgccacaatggaatgaaccaccaactattccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatacacactcatttacacactacggccaatattGTTTTTGTAGTTCACCtgcagcacatgtgtttggactgtgggtgaaacccacgccaacacgggaagaacatgcaaactccaaacgccaactggcccagccggaacttgaaccagcgacctttttgctgtaaggccacaatgctaaccacCGTGTCACCAGCA

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010426-5 Predicted to enable DNA binding activity and FAD binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; endocrine system; eye; intestine; and liver and biliary system. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome. Orthologous to human CRY1 (cryptochrome circadian regulator 1).

Ensembl:

ensembl_id ENSDART00000192538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039739 lncRNA upstream 125941 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042005 lncRNA upstream 480591 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 502606 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 729427 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042007 lncRNA downstream 2318 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 114229 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039763 lncRNA downstream 246436 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039764 lncRNA downstream 253569 1062851 ~ 1066844 (+) True XLOC_019931
TCONS_00042009 lncRNA downstream 385589 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00039743 mRNA upstream 36403 737211 ~ 753392 (+) True XLOC_019922
TCONS_00039742 mRNA upstream 56456 724639 ~ 733339 (+) True XLOC_019921
TCONS_00039740 mRNA upstream 88690 696931 ~ 701105 (+) False XLOC_019920
TCONS_00039741 mRNA upstream 88690 697024 ~ 701105 (+) True XLOC_019920
TCONS_00039738 mRNA upstream 124424 661711 ~ 665371 (+) False XLOC_019919
TCONS_00039752 mRNA downstream 26446 835728 ~ 856886 (+) True XLOC_019925
TCONS_00039753 mRNA downstream 74396 883678 ~ 898645 (+) True XLOC_019926
TCONS_00039754 mRNA downstream 169585 978867 ~ 987388 (+) False XLOC_019928
TCONS_00039755 mRNA downstream 171008 980290 ~ 996521 (+) False XLOC_019928
TCONS_00039756 mRNA downstream 178506 987788 ~ 994500 (+) True XLOC_019928
TCONS_00039759 other downstream 209319 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 230266 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 440506 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 440957 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039784 other downstream 514232 1323514 ~ 1329146 (+) True XLOC_019943

Expression Profile

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