RNA id: TCONS_00039740


Basic Information

Item Value
RNA id TCONS_00039740
length 1485
RNA type mRNA
GC content 0.60
exon number 2
gene id XLOC_019920
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 696931 ~ 701105 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTCTGCTCCATCATGATGCTGAGCGCTTTACTGGTCCTGATGGCGCTCGCAGCCTCCATCCAGGCGGAGAACCGAGCGCTGGAGACGAAGATGGAGCCTTCATCATCACATCCAtattattcatcatcatcatcatcatctgtgcaTGAAGCAGGTAGAGCAGGTCACGCACCGAGAGTGCCGCGCGGTTCCAAATCCAGACCGCGGGAGCGCTCGGAGCCGCAGCCGCCGAGAGCGCACCCGGAGGCGGACACTTTCTTCACCACCCCGCGGCCCTTCAGCGGCGCGCTGCGCCTCCACAACCCGCTGTTCCCGGTCACCGACGAGTCCTACAGCGCCTACGCCGTGCTGCTGCTGGCGCTGATCGTGTTCTCCGTGGGCATCGTGGGAAACCTGGCGCTCATGTGTATCGTGTGGCACAACTATTACCTGAAGAGCACCTGGAACTGCGTGCTGGCCAGCCTGGCCTTCTGGGACTTCATGGTGCTGTTCTTCTGCCTGCCGGTGGTCATCTTCAATGAGCTGACCAAGAGGAGGCTGATGGGGGACCTGTCCTGCAGAGCAGTGCCCTATGTGGAGgTGGCATCCCTGGGCGTGACCACGTTTACTCTGTGTGCGCTCAGCATCGACCGCTTCCACACGGTGACCAGCGGTCAGTCGAGGCCGCGGCAGGGCGAGTCCTGTCAGTCAATCCTGGCCAAGCTGTCTGTGATCTGGCTGGGCTCATTGCTGCTGGCGGCGCCGGAGCTGCTGCTGTGGCGTCTGGAGCAGGACGGGTCTCCGCAGTCAGGTCTCCCAGTGGACGCCTGTCGCCCACAGCCGTCCGCGGATCTGCCTGACGCACTGCTCTCGCTGGTGCTCACCTACCAACACGCCCGCATGTGGTGGACGTTCGGCTGCTATTTCTGCCTGCCGCTGCTGTTCACAGGTGCCTGTCATCTACTCACTCGACACGTCAGCGAGGATGAAAAAACCCTACgttcatcatcaacatcatcatcgtCCTCTTCATCATCGATAAAAAAACGAAGAAGAGAGCGTCAGCTGACTCGAACGGTAGTGGCGCTGGCGTTCATCTACGCGATATGTAGTTTGCCGGAATACATCTGGAATATCGTGCTGGCGTATGTGGGCGTGGATGTGGGTGTGGCCACACAGGCTCTGctggctctgattggtcagtttttgTTGTTTGTGCGTGCCGGAGCGACGCCGGTTGTGCTGCTGTGCATCTGTCGGTCTCTAGGTCAGGCGTTCAtggactgctgctgctgctgctgcgagGAGTGTTTTTCAGATCCCTCGTCCTCCTGTACGACCTCGTCTGTGTCCACCAATGCCACCGCCGTGTCCTCGCCGCCGGCCTCGCCCGTCTCCATGCAAGAGGACAAGCTCAAGATCGTGTCTGGGACATCGCCGGCCGTGTTTTTCGATAAGGTTAAGGAGAGTCCAGCTGAGCTGATCATCGGTACGCCGTGTTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0043410 positive regulation of MAPK cascade biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-20 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and positive regulation of MAPK cascade. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Orthologous to human GPR37L1 (G protein-coupled receptor 37 like 1).

Ensembl:

ensembl_id ENSDART00000149712

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039739 lncRNA upstream 33077 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042005 lncRNA upstream 387727 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 409742 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 636563 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042003 lncRNA upstream 640191 53914 ~ 56740 (+) True XLOC_019903
TCONS_00042006 lncRNA downstream 102399 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 106348 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042007 lncRNA downstream 110495 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 222406 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039763 lncRNA downstream 354613 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039738 mRNA upstream 31560 661711 ~ 665371 (+) False XLOC_019919
TCONS_00039737 mRNA upstream 31792 661505 ~ 665139 (+) False XLOC_019919
TCONS_00039736 mRNA upstream 59376 635813 ~ 637555 (+) True XLOC_019918
TCONS_00039734 mRNA upstream 112321 567733 ~ 584610 (+) False XLOC_019917
TCONS_00039735 mRNA upstream 115242 569565 ~ 581689 (+) True XLOC_019917
TCONS_00039742 mRNA downstream 23534 724639 ~ 733339 (+) True XLOC_019921
TCONS_00039743 mRNA downstream 36106 737211 ~ 753392 (+) True XLOC_019922
TCONS_00039744 mRNA downstream 85451 786556 ~ 808881 (+) False XLOC_019923
TCONS_00039746 mRNA downstream 88690 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039745 mRNA downstream 88690 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039750 other downstream 102399 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 317496 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 338443 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 548683 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 549134 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

//