XLOC_019922 (znf76)


Basic Information

Item Value
gene id XLOC_019922
gene name znf76
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 737211 ~ 753392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039743
ACCGCAGTGCATGTTGGGCCGCTGGCGGTGatcagCGTTGTGATGGAGGGGCTGGGGCTTCAGGCTGTGGCTCTGAGCGACGGATCCACTGCTTTTATCCAGCAGAGCATCAGCGATGGGAGTCTAGTAGAAGGAAACACCATTCAGCTGGAGGACGGGACGACCGCATACATTCAACACGTCAGCGTCCAGcagaaagagTCATTGGCGTTTGAGGATGGTCAGGCCGTTCAGTTGGAGGACGGAACCACCGCCTTCATCCACCACACGCCTAAAGAAGGGTTCGACCCTGGCGCAGTGGAGGCGGTTCAGCTGGAGGATGGCAGCACCGCTTATATCCACCATCAGCCAGGGGGCGCTGTGGAGATGAGCGCAGACACCATCGCCACGCTGGAGAACTACGCCAGCAAGCTGACGGGGTCAGAGGTCGAGGCCGACGACAACATGGAGAATGCGAATGGAGCGGAGCAGACCAGCATTCAGCTGATGTTCGAGGGGAAGGTCTGGAGCTCAAGTAAAGTCCAGCAGGTCACAGACAGAAGTTTCCGCTGTGAACACCCGGGCTGTGGGCGATACTACACCACCGCGCACCATCTGAAGgtTCACGAGCGCTCACACACTGGGGACCGGCCGTACCGCTGCGAGGTGCACTCCTGCGGGAAAGCCTTCGCCACCGGCTATGGCCTGAAAAGCCACCAGCGCAcacacaccggagagaaaccctaCAAATGCCCtgaagacatgtgctataaagCATTCAAGACCTCCGGGGACCTGCAGAaacacgtgcgcacacacaccgGCGAGAAGCCCTTTAAATGTCCATTTGAGGGCTGTGGACGCTCCTTCACCACCTCCAACATCCGGAAGgttcacacacgtacacacactggCGAAAGACCTTATCTGTGCCCAGAGCCGTCCTGCGGTAGAGCGTTCGCCAGTGCCACCAACTACAAGAACCACATGAGGATACACACAGGTGAGAAGCCGTACCTGTGCACAGTCCCCGGctgcgggaagagtttcacagAATATTCCAGTCTTTATAAGCATCATGTGGTCCACACACACTGTAAGCCGTACACCTGCAGCCACTGCGGGAAAACCTACAGACAGACGTCCACGCTGGCCATGCACAAACGCACCGCACATGGAGACTTCGACACCACAGAGGACGATGCAGAGGTGTTGGACGGGTCGCCGCAGGATGTCGGGCACAGCGAGCCTGATGCTGACATCGCCATGGAAACCAACGACATCATCAGCTCACACCTGCAGGTCCTCGGCACCGCCGTCACCATGGTTACCCAGGATGGATCCACCATCTCTGTTCCTGCCCAGCAGAGCCACAGCGGCGGGCAGCAGGTCACCATGCTTACAGATGGCAAAGAGCTGCAGCCGGTTGCCATAGTAACATCAGACGGTATCATGACTGAAGTGAACTCGTCGGCataccagcaggtggcactgttaGCCACGGAAAACGGCACGCAGATCGCAGTACAGTTAGAAGATCAACAGACGTTAGAGGAGGCAATCACCATGGCAACAGCAGCAATCCAGCACAGTGGACTGACCTCAGATCAGTGATGGATGAAAACACAGACTGGATGAACAGCGTTTTAATGTGTAGTGTGTGTGACGGAGAGTGTCTGGAGTTATTTTGTACCTGCTTTGAGGCAGTAGGATTAAAACATGCTGAAAATAAAGATGTATATTTGTTAATAAAGACACTTTATGCA

Function

symbol description
znf76 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in eye; gut; hindbrain; midbrain hindbrain boundary; and trigeminal placode. Orthologous to human ZNF76 (zinc finger protein 76).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-379 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in eye; gut; hindbrain; midbrain hindbrain boundary; and trigeminal placode. Orthologous to human ZNF76 (zinc finger protein 76).

Ensembl:

ensembl_id ENSDARG00000013279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039743 True 1745 mRNA 0.55 13 737211 753392

Neighbor

gene id symbol gene type direction distance location
XLOC_019921 zgc:162255 coding upstream 3872 724639 ~ 733339 (+)
XLOC_019920 gpr37l1a coding upstream 36106 696931 ~ 701105 (+)
XLOC_019919 elf3 coding upstream 71840 661505 ~ 665371 (+)
XLOC_019918 pth4 coding upstream 99656 635813 ~ 637555 (+)
XLOC_019917 med20 coding upstream 152601 558287 ~ 584610 (+)
XLOC_019923 cry3b coding downstream 33164 786556 ~ 809282 (+)
XLOC_019924 NA coding downstream 58208 811600 ~ 817627 (+)
XLOC_019925 dennd2db coding downstream 82336 835728 ~ 856886 (+)
XLOC_019926 stk38b coding downstream 130286 883678 ~ 898645 (+)
XLOC_019927 NA coding downstream 170119 923511 ~ 938827 (+)
XLOC_019910 NA non-coding upstream 428007 240168 ~ 309204 (+)
XLOC_019909 NA non-coding upstream 450022 219167 ~ 287189 (+)
XLOC_019902 NA non-coding upstream 676843 51545 ~ 60368 (+)
XLOC_019903 NA non-coding upstream 680471 53914 ~ 56740 (+)
XLOC_019901 NA non-coding upstream 709367 24421 ~ 27844 (+)
XLOC_019938 CU570769.1 non-coding downstream 496396 1249788 ~ 1267820 (+)
XLOC_019944 NA non-coding downstream 563360 1316752 ~ 1364861 (+)
XLOC_019947 BX322657.1 non-coding downstream 623939 1377331 ~ 1384069 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00304422_00316712 ZNF76 coding CI01000186 null 304318 ~ 316863 (-)
bowfin (Amia calva) AMCG00007228 NA coding CM030123.1 CM030123.1 7936262 ~ 7946941 (-)