RNA id: TCONS_00039743


Basic Information

Item Value
RNA id TCONS_00039743
length 1745
RNA type mRNA
GC content 0.55
exon number 13
gene id XLOC_019922
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 737211 ~ 753392 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGCAGTGCATGTTGGGCCGCTGGCGGTGatcagCGTTGTGATGGAGGGGCTGGGGCTTCAGGCTGTGGCTCTGAGCGACGGATCCACTGCTTTTATCCAGCAGAGCATCAGCGATGGGAGTCTAGTAGAAGGAAACACCATTCAGCTGGAGGACGGGACGACCGCATACATTCAACACGTCAGCGTCCAGcagaaagagTCATTGGCGTTTGAGGATGGTCAGGCCGTTCAGTTGGAGGACGGAACCACCGCCTTCATCCACCACACGCCTAAAGAAGGGTTCGACCCTGGCGCAGTGGAGGCGGTTCAGCTGGAGGATGGCAGCACCGCTTATATCCACCATCAGCCAGGGGGCGCTGTGGAGATGAGCGCAGACACCATCGCCACGCTGGAGAACTACGCCAGCAAGCTGACGGGGTCAGAGGTCGAGGCCGACGACAACATGGAGAATGCGAATGGAGCGGAGCAGACCAGCATTCAGCTGATGTTCGAGGGGAAGGTCTGGAGCTCAAGTAAAGTCCAGCAGGTCACAGACAGAAGTTTCCGCTGTGAACACCCGGGCTGTGGGCGATACTACACCACCGCGCACCATCTGAAGgtTCACGAGCGCTCACACACTGGGGACCGGCCGTACCGCTGCGAGGTGCACTCCTGCGGGAAAGCCTTCGCCACCGGCTATGGCCTGAAAAGCCACCAGCGCAcacacaccggagagaaaccctaCAAATGCCCtgaagacatgtgctataaagCATTCAAGACCTCCGGGGACCTGCAGAaacacgtgcgcacacacaccgGCGAGAAGCCCTTTAAATGTCCATTTGAGGGCTGTGGACGCTCCTTCACCACCTCCAACATCCGGAAGgttcacacacgtacacacactggCGAAAGACCTTATCTGTGCCCAGAGCCGTCCTGCGGTAGAGCGTTCGCCAGTGCCACCAACTACAAGAACCACATGAGGATACACACAGGTGAGAAGCCGTACCTGTGCACAGTCCCCGGctgcgggaagagtttcacagAATATTCCAGTCTTTATAAGCATCATGTGGTCCACACACACTGTAAGCCGTACACCTGCAGCCACTGCGGGAAAACCTACAGACAGACGTCCACGCTGGCCATGCACAAACGCACCGCACATGGAGACTTCGACACCACAGAGGACGATGCAGAGGTGTTGGACGGGTCGCCGCAGGATGTCGGGCACAGCGAGCCTGATGCTGACATCGCCATGGAAACCAACGACATCATCAGCTCACACCTGCAGGTCCTCGGCACCGCCGTCACCATGGTTACCCAGGATGGATCCACCATCTCTGTTCCTGCCCAGCAGAGCCACAGCGGCGGGCAGCAGGTCACCATGCTTACAGATGGCAAAGAGCTGCAGCCGGTTGCCATAGTAACATCAGACGGTATCATGACTGAAGTGAACTCGTCGGCataccagcaggtggcactgttaGCCACGGAAAACGGCACGCAGATCGCAGTACAGTTAGAAGATCAACAGACGTTAGAGGAGGCAATCACCATGGCAACAGCAGCAATCCAGCACAGTGGACTGACCTCAGATCAGTGATGGATGAAAACACAGACTGGATGAACAGCGTTTTAATGTGTAGTGTGTGTGACGGAGAGTGTCTGGAGTTATTTTGTACCTGCTTTGAGGCAGTAGGATTAAAACATGCTGAAAATAAAGATGTATATTTGTTAATAAAGACACTTTATGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-379 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in eye; gut; hindbrain; midbrain hindbrain boundary; and trigeminal placode. Orthologous to human ZNF76 (zinc finger protein 76).

Ensembl:

ensembl_id ENSDART00000017305

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039739 lncRNA upstream 73357 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042005 lncRNA upstream 428007 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 450022 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 676843 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042006 lncRNA downstream 50112 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 54061 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042007 lncRNA downstream 58208 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 170119 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039763 lncRNA downstream 302326 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039742 mRNA upstream 3872 724639 ~ 733339 (+) True XLOC_019921
TCONS_00039740 mRNA upstream 36106 696931 ~ 701105 (+) False XLOC_019920
TCONS_00039741 mRNA upstream 36106 697024 ~ 701105 (+) True XLOC_019920
TCONS_00039738 mRNA upstream 71840 661711 ~ 665371 (+) False XLOC_019919
TCONS_00039737 mRNA upstream 72072 661505 ~ 665139 (+) False XLOC_019919
TCONS_00039744 mRNA downstream 33164 786556 ~ 808881 (+) False XLOC_019923
TCONS_00039746 mRNA downstream 36403 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039745 mRNA downstream 36403 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039748 mRNA downstream 36436 789828 ~ 807858 (+) False XLOC_019923
TCONS_00039747 mRNA downstream 36436 789828 ~ 807858 (+) False XLOC_019923
TCONS_00039750 other downstream 50112 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 265209 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 286156 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 496396 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 496847 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00304422_00316712.mRNA True 2721 mRNA 0.58 19 CI01000186 304318 ~ 316863 (-)
rainbow trout (Oncorhynchus mykiss) LOC110493205 False 2582 mRNA 0.47 12 NC_048581.1 50914525 ~ 50927415 (-)
bowfin (Amia calva) AMCG00007228 True 2448 mRNA 0.50 15 CM030123.1 7936262 ~ 7946941 (-)