RNA id: TCONS_00042003


Basic Information

Item Value
RNA id TCONS_00042003
length 2297
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_019903
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 53914 ~ 56740 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGAAATGCTGTTTATTGTGAAAGTGCTTTATGAACACAACAGGAGCATGTGCCTAATATGAAACACTCTCGGTTTAGAATCATAAAGGTCTGTAATAAAGAGGTCATTTCTGGCATTAGAAGATTTTCATGATTTATTGTGATTAAAGGACATTACATAGGTGAAACTGTGGTTGTACGTGTTCCTGtgtggattgtgtgtgtgtgtgtgtttgatcagtTGTTGTGTTTCCATCCAAGGATGTGAATTAGATTTATGCGCAatactggaatattgcataaaatatttagattaaagagcccctgttatgTGTGTTTGAAGATGATCTTATTAGAGGGTTAGAGCGTTACATCTAAATGTgcgccatgtttaaaactattgattctttaacgaaagagtcgactcagagtcgaatgaatgaattgtgttgggttcggatcttttgcttgaacgtGTCGACGTCGATTCAACACATTAACAAATATGTAGTTCCGGTAATACGTGAACGCGCCTTTCTCTTTATTCATtcggctctcacatactctgtgtGCTACTACATAGCCGACCTACTGAAATTAAACTACATAAAAGACCAAGACCAAACGCAATGATTGTGGTGAATGCTGTAACTTTTGGAGGCGTGAGATGGGAgcacagacagatgctcaagactaTACAAgaataatactgaagcactgtgattaTGAACTGCAAACCatcattactgacacaaagaccctcacacacacatttatatctgcagactaacattactgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaataacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccatcattactgacacaaagaccctcacacacacatttatatctgcagaccaacattaataacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcacaccaacattaatgacgcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcacaccaacattttcacaaagaccctcacacacacatttatatcttcAGACCAACATTGTCAcaaagactcacacacacacatttatatctgcagaccaacattaatgacgcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgactcaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatctgcagaccaacattaatgacacaaagaccctcacacacacatttatatcttcACACCAACATTttcacaaagaccctcacacacacatttatatctgcacaccaacattttcacaaagaccctcacacacacatttatatcttcAGACCAACATTGTCACAaagactctcacacacacatttatatcttcAGACCAACATTGTCACAaagactctcacacacacacacatttattagcATCTGTCAAACACTAAATCACACAGACTGATGAGTTTACTTACTACAGCTGTATACAGCAGAGTTTATTCCTTATCAGACAAATGTTTATCCAAGTCTAATCGTTTTTAATGTGTATTTCCATTAATA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042001 lncRNA upstream 26070 24421 ~ 27844 (+) True XLOC_019901
TCONS_00042004 lncRNA downstream 162427 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042005 lncRNA downstream 183428 240168 ~ 309204 (+) True XLOC_019910
TCONS_00039739 lncRNA downstream 605363 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042006 lncRNA downstream 746764 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 750713 807453 ~ 808457 (+) True XLOC_019923
TCONS_00039717 mRNA upstream 29639 22888 ~ 24275 (+) True XLOC_019900
TCONS_00039716 mRNA upstream 35690 11395 ~ 18224 (+) True XLOC_019899
TCONS_00039718 mRNA downstream 3524 60264 ~ 84423 (+) True XLOC_019904
TCONS_00039719 mRNA downstream 25059 81799 ~ 89987 (+) True XLOC_019905
TCONS_00039720 mRNA downstream 37952 94692 ~ 102265 (+) True XLOC_019906
TCONS_00039721 mRNA downstream 48636 105376 ~ 109686 (+) True XLOC_019907
TCONS_00039722 mRNA downstream 53418 110158 ~ 130695 (+) True XLOC_019908
TCONS_00039750 other downstream 746764 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 961861 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 982808 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 1193048 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 1193499 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

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