XLOC_019906 (nckipsd)


Basic Information

Item Value
gene id XLOC_019906
gene name nckipsd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 94692 ~ 102265 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039720
ATGTACCACTCTCTGTTCTCCTTCAGCTCTGCGGAGCAGAACGCGCTGCATTTCCCCGCCGGAGAAGCGTTCCTGATCCTGGAGCGCAGCAGCGCGCACTGGTGGCTGGCGACCCGCTGCAGCTCAGGGGAGACCGGATACATCCCGGCGGCCTACCTGCAGAAGATCCcgGCCCCGGAGCAGGACGAGGTGCTGCAGTCTATTGATCGCGCTATCGAAGCCATCCACAACGTAGCGATGACCAACGGAGGAAAATACAACCTGGAGCAGCGAGACGTGCTGCAGAAGCTGATCCACCACAGGAAGGAGACGCTGTCCCGCAGAAGCCCCACCCCCTCCGGCGTCAAGTCTAAGATCCCGTCATCCTCCAGTGAGGCGTCGCTGAGCCAGACCCCCCCGCCCAATGGTCTGAGCCGCACCCCCCCTCCCAACGGTCTGAGCCGCGCCCACAGCTGCCAGGGCAGCAAGCCGATGTCAGAGCGCACCGCCAGTGTTCCCGGACTCTACCAGGTTCCTCCTCATCCTCGTAGAGCAGCACCTGATACTCCACCTGCACTGGATAAACAACGCAACGATCCTCCAATGTCTTTGCGAGTTTCCTCCACAAGCCCCACCCCCAGCTCTGTAGCTCCTCCTGGACCTTCTCTGTCTATAAGCTCCGCCTCTCTAGACTCCGGCTCCTCCCAATCAGGTGTTTCCTCAGATGTCAGTCTTCCAAGTGTCAGTAGCACTCCGCCCCCTGTGCCAAAACGTGGCAAGGCCCCGCCCCCTCCTCCACCTGACCAATCCCCCCAGGAAGAGCCTGTGAAAAAGAGTCCAGcacctcagccaatcagatcacaggCTCCACCTCCTCCCCCAGACCTTTCTATAAAGACCCTGACACCTCAGCCAATCAGCTCACAGGCTCCGCCTCCTCCTACAGACCTTTCTAAAGAGAGCCCAGTGCCTCAGCCAATGGGTTTGCAGCCTGCTGCTGAGCCCCACCCAGAGGTGGAGTGGCCTTTAGCTCCTCCCCCTGTGTCCCTCAGCCCTCCGGCAGGCTCCGCCCAGTGTGCTTTGCCACTGACGATCGGGGCGGAGCTGACGGAGCTGGTGCGGCGGAACACGGGTCTGAGCTGCGAGCTGTCGCGGGTGGCGGTGGGCGTGGTGGTGGGCCGTCTGCAGGGGGCGCTGCCCGGGGCGCAGGTGCAGCTGGAGCAGGTGCTGCAGTCGCTCGCTCTCAGCACGGATCTGCCGCTCGGACAGGTGTGCCACGACCAGCAGCGGCTGCAGGTGATCTTCGGGGACCTGGCGCGACACCGTGAGGACTCTCAGCAGCGCAGCTGGGCGCTCCACGAAGACCACGCCCTCATCGCCTGCTACCTGGAGGAGCTGCTGCAGATACTGACGGACGCGGACGCAGAGGTGTGTAGGAAGATGTGCCGCGTCAACGAGTTCGAGCCGGTTCTGTCGCTGGTGTCGTACTACCAGATGgagCACCGTGTGTCTCTGCGGCTGTGGCTGCTAAAGGTGTTCGGGGCGATGTGTGGTCTGGACGCGGCGCTGATCTCCACTCTGCTGAACTCCGTCCTCACCATGGAGCTGGCCCGAGACCTGCAGACTGACACTGAtgagcaTGAGAAGATGTGCTACAGTGCGCTGCTGATGGCGATGGTGTTTTCCACGGGCGAGCAGATCCCGCTGCACCACTACGagcacCTGAACGCTGGTTTCCTGCAGTTCCTGCTGGATGTGATTGAGGACGGGTTGCCCACAGACAGCACTGAGCAGCTGCCGGACCTCTTCATCAACGTGCTGCTGGCCTTCAACCTGCACCTGAGTGtgccGGACAGTAATATAGTGATGCAGACGCTGATGAAGAGGGACAACGCCAAGATCCTGAGTGAGAAACTACTGCTGCTGCTCAACAGAggagaggacCCGGTGTGTGTGTTCAGTCACGCTCCTGCAGCTCCTCATGCGGTGGTCAAGTTCCTCCAGGATGTGTTCTCCAGTGCAGACTCCGCTCAGATCTTCTACCGCAGTGACCTGATGGTGCTGATCGACATCACCGTGCGGCAGATCTCAGACCTGGAGCCCGGAGACCGCATGCGTGCGCAGTATCTCTCCCTCATGCTCTCCGTCATGCGCTGCTCTGAGTACCAGGAGCACCGGCACCGGCTGGCGGACCTGCGGGCGGcgctgcagaggattctgggagAGGAGGAGAGCGGCGCGGCGGAGCGGAGCATCGTGCTGCAGATCTATGAGGAGTTCCCAGATACCTGCAGCTCCTGA

Function

symbol description
nckipsd Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130326-2 Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

Ensembl:

ensembl_id ENSDARG00000079475

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039720 True 2280 mRNA 0.62 12 94692 102265

Neighbor

gene id symbol gene type direction distance location
XLOC_019905 zgc:112334 coding upstream 4705 81799 ~ 89987 (+)
XLOC_019904 CABZ01085137.1 coding upstream 10269 60264 ~ 84423 (+)
XLOC_019902 NA coding upstream 34324 51545 ~ 60368 (+)
XLOC_019903 NA coding upstream 37952 53914 ~ 56740 (+)
XLOC_019901 NA coding upstream 66848 24421 ~ 27844 (+)
XLOC_019907 slc25a20 coding downstream 3111 105376 ~ 109686 (+)
XLOC_019908 prkar2ab coding downstream 7893 110158 ~ 130695 (+)
XLOC_019909 NA coding downstream 116902 219167 ~ 287189 (+)
XLOC_019910 NA coding downstream 137903 240168 ~ 309204 (+)
XLOC_019911 btg2 coding downstream 233991 336256 ~ 339623 (+)
XLOC_019924 NA non-coding downstream 709335 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 821246 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 1147523 1249788 ~ 1267820 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00768176_00773034 NA coding CI01000186 null 767681 ~ 773102 (-)