XLOC_019907 (slc25a20)


Basic Information

Item Value
gene id XLOC_019907
gene name slc25a20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 105376 ~ 109686 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039721
GTGGGTGAAGGGTCGCTGAGAGACGCAGACGCTGCAGACTGACCGCTGAACCCCCCCGGTACTCCGCCGTTATTCTGCACGCTGCGGATCCCACACGCTCAGTCCTCCGGGTTTGAGACTCTCCGACAGAATCATGTCGAAGCAGCAGCCGATCAGCCCCATGAAGAACTTCTTCGCCGGCGGGTTTGGGGGAGTGTGCCTAGTGTTCGCCGGACACCCGCTGGACACCATCAAGGTGCGCCTGCAGACGCAGCCCAAACCCCGTCCTGGAGAAGTTGCGCAGTACGCCGGAACATTCGACTGCTTCAAGAAAACACTGGCcaaagagggcgtGCGGGGTCTCTATAAGGGTATGGCGGCCCCCATCATTGGTGTGACCCCGATGTTCGCCGTCTGCTTCTTCGGTTTTGGCCTGGGGAAGAAATTACAGCAGAAAACACCCGACGACATCCTGAcgtatCCGCAGCTGTTTGCCGCTGGTATGCTGTCAGGTGTGTTCACAACAGCCATTATGGCTCCTGGAGAGAGAATCAAGTGTCTCCtgcagatccAGGCGGCGTCGGGGCAGGTGAAGTACGCGGGGCCGATGGACTGTGTTAAACAGCTGTACAGAGAGAGCGGCATCAGGGGCATCTACAAGGGGACAGCACTCACACTCATGagggACGTGCCGGCCAGTGGGATGTACTTCATGACGTATGAGTGGCTGAAGCACGCGCTGACACCAGAGGGAAAGAgcccCAGTGAGCTCAGCGTTCCCAGTATCCTGTTCGCCGGTGGGATGGCGGGAATCTTCAACTGGGCCGTGGCCATTCCTCCCGATGTGCTGAAGTCCCGCTTCCAGACggCTCCAGAAGGTAAATACCCCAATGGTTTCCGGGATGTGCTGCGAGAGCTGGTGCGTGAGGAGGGCGTCCGCTCGCTCTATAAGGGCTTCAACGCCGTCATGCTGCGCGCGTTTCCAGCCAACGcgGCCTGTTTCCTGGGCTTTGAGGTGGCCATGAAGTTCCTCAACTGGATCGCTCCCAACCTGTGATGCGTGTGCTGGAGAACACGCGTGAACAGTGGACACTGGCCGAGAACGCAGCTCACGCTAATGAACGCCTCGCTGGTTCCTCGACAGGATTTTAATCCAGTAGCTGGTGCCTTATAACAGACTGTGAACCGATTTCTGCCTTCAGGGAAACTGAATGTTTATAACGCAACAGCAAACCCGTCAAACGCTAGCAAACCTCTGTCAGGACATTAGCATATACGTTTACAGTATGGTCAGCCTTCAGCCCTCACGACAGGAATTCAGAACACAGTCAAGGCCTATCATCTTTTAATTGTTCTGTTAATTATGTTTAATCATCACACTCatcatgtaaataattaaatgtttattgatCATT

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1869 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

Ensembl:

ensembl_id ENSDARG00000040401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039721 True 1394 mRNA 0.55 9 105376 109686

Neighbor

gene id symbol gene type direction distance location
XLOC_019906 nckipsd coding upstream 3111 94692 ~ 102265 (+)
XLOC_019905 zgc:112334 coding upstream 15389 81799 ~ 89987 (+)
XLOC_019904 CABZ01085137.1 coding upstream 20953 60264 ~ 84423 (+)
XLOC_019902 NA coding upstream 45008 51545 ~ 60368 (+)
XLOC_019903 NA coding upstream 48636 53914 ~ 56740 (+)
XLOC_019908 prkar2ab coding downstream 472 110158 ~ 130695 (+)
XLOC_019909 NA coding downstream 109481 219167 ~ 287189 (+)
XLOC_019910 NA coding downstream 130482 240168 ~ 309204 (+)
XLOC_019911 btg2 coding downstream 226570 336256 ~ 339623 (+)
XLOC_019912 CU914780.1 coding downstream 235077 344763 ~ 355286 (+)
XLOC_019901 NA non-coding upstream 77532 24421 ~ 27844 (+)
XLOC_019924 NA non-coding downstream 701914 811600 ~ 817627 (+)
XLOC_019927 NA non-coding downstream 813825 923511 ~ 938827 (+)
XLOC_019938 CU570769.1 non-coding downstream 1140102 1249788 ~ 1267820 (+)

Expression


Co-expression Network