RNA id: TCONS_00039736


Basic Information

Item Value
RNA id TCONS_00039736
length 366
RNA type mRNA
GC content 0.63
exon number 2
gene id XLOC_019918
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 635813 ~ 637555 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGAAGATGCAGAGATCTCAGCAGCGCGTCGCTCTCATGATGCTGATGGTGGTCGCCGCCGTGCACTGCCAGGAGAGCGAGAGTAGGCGTGCGGTCACAGAGCACCAGCTGATGCATGACCGCGGTCGCTCCATTCAGAGTCTGAAGCGTCTGATCTGGCTGTCCAGCGCCATTGAGGGGCTTCACACTGCGCAGGCGCGAACACTGGAGCCcgacagcaggtggcgctctcgCGGGGCGCAGCTCTACTCTCAGCCCGGCAGAGAGGAGAGCAGCGGCGGCCAGAAGAGGGCGCTGGAGACGCTGCTCAGCGACCTGTACCGGGCACACCTGACGTTCGGCCTCGGAGAACCGGAGAAATAA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0030500 regulation of bone mineralization biological_process
GO:0030282 bone mineralization biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-180611-1 Predicted to enable hormone activity. Acts upstream of or within regulation of bone mineralization. Predicted to be located in extracellular region. Is expressed in diencephalon; dorsal periventricular hypothalamus; hypothalamus; and inferior lobe.

Ensembl:

ensembl_id ENSDART00000179067

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042005 lncRNA upstream 326609 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 348624 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 575445 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042003 lncRNA upstream 579073 53914 ~ 56740 (+) True XLOC_019903
TCONS_00042001 lncRNA upstream 607969 24421 ~ 27844 (+) True XLOC_019901
TCONS_00039739 lncRNA downstream 24548 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042006 lncRNA downstream 165949 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 169898 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042007 lncRNA downstream 174045 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 285956 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039734 mRNA upstream 51203 567733 ~ 584610 (+) False XLOC_019917
TCONS_00039735 mRNA upstream 54124 569565 ~ 581689 (+) True XLOC_019917
TCONS_00039732 mRNA upstream 67890 558287 ~ 567923 (+) False XLOC_019917
TCONS_00039733 mRNA upstream 71583 560776 ~ 564230 (+) False XLOC_019917
TCONS_00039731 mRNA upstream 100359 508290 ~ 535454 (+) True XLOC_019916
TCONS_00039737 mRNA downstream 23950 661505 ~ 665139 (+) False XLOC_019919
TCONS_00039738 mRNA downstream 24156 661711 ~ 665371 (+) False XLOC_019919
TCONS_00039740 mRNA downstream 59376 696931 ~ 701105 (+) False XLOC_019920
TCONS_00039741 mRNA downstream 59469 697024 ~ 701105 (+) True XLOC_019920
TCONS_00039742 mRNA downstream 87084 724639 ~ 733339 (+) True XLOC_019921
TCONS_00039750 other downstream 165949 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 381046 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 401993 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 612233 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 612684 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

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