RNA id: TCONS_00039788


Basic Information

Item Value
RNA id TCONS_00039788
length 5270
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_019948
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1384104 ~ 1407856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgagtgatccagaaccctgcagaattaaagaGGAAGAGACGGAAGAACAAATAGACCTGATAATGGAGAACGAGGAGAAACTTCACCATGTCAAGAAATGTTTGACCTGCACTGAGTGTGGAAAGACATTTGCATCCAAACGGAATCTCAAGGTTCAtacgaggatccacactggagagaaaccattcggatgcactcagtgtgggaagagtttcagacagtcatcatcccttaatcaacacatgctgatccacaccggagagaaaacACAGAAGTGTGAACAATGcggcaaaacatttttgaggaCTTCAGAGCTGAAGAGCCATCTTAGCGTTCATACAAACGAGAAGCCTTACTCGTGTTCGGAGTGTGGAAAAATCTTTACACACCAAAACCTTCTAAGAAAACATCAGAAGattcacactggtgtgagagagtttgtgtgctttgagtgtgagaagagttttatTAGAATTGCAGACCTGAAAcagcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgaccaGAGATTCATTCAGTTAGGGCATCTGAAAGCGcacgagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaacaGATTCGTTCAGTCAGGAGACCTGAAAAGACATGAGatgattcacaccggagagaaaccttacaagtgttcacactgcgacaacaGATTCAGTCAGTCCGCAGATCTGAAAAGACacaagaggattcacactggagagaaaccgtacaagtgttcacactgtgacaaaaCGTTTCGTCAGTTAGGAAACCTGAAAAGACATGATAGGACTCACTCTGGAGAGATATCAAACTTGGTTGGCATTACTGAAAACACCTGTGTACCTGTGTATGTCGTGGGGGAAAACAATCTATTAGAGTGAATGTGCATATAGACTTTGTTAGCTGCTTGATCTTGATTCTCtgtaattattatgattaatttgAACTTGTTTCAATGCTAAAAGCTGCTGTTTGATGttttacaccaggggtcaccaaacttgttcctggagggtcggtgtcctgcagatttaagctccaaccctaatcaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacatccaggcaggtgtgtttaggtAAGtaagagctaaaccctgcagggacaccggccctccaggaccgagattggtgacttCTGTTTTACACCatcaatcaatttaaaaaacCCAATCATAACTTTTATATACGGTCAAATATACATATGCCTCCTGGTTGGATGAACACTCACAGCACTTTGCATTGTAAAACACAGCATATAAGCACTTTCAAGATAGCCCTTTATTTATCCTTTTATGGTGTAGTGTCAGTTACATttggcatacctgccaacactcccgtttttcctgagAGTCTTCCCTATTTtagacccatctcccaccaccctccagttttgttatttctcccggaaaactcccgtaatttcaagCTCCTTCAGTCCTCAgcattttggtacagtctgtgaaACTCCCGGGTCGCCAACTTTGGTGTAGGATCCGATTGCAGCGGCCGCCCAAAACACGGTTCATTGTACAATTAGTAACACCACAGTACATGTAACCCCGCTGTtcttacaccacccaacccgctccaaactgggatcgaaccggcgaccttccacatgggagtcggttgctctaccaaggagtctaaagaccatggcctctagcatctgtcgctagaccACCttgctttagaggtcagaggagtggggtgtacctgcacagcacttactagctgaccTCCGTtgcactcacccccctaaacttcacccccatccgggtcacggcaccaatgtaaccccgccggtcctacaccacccaaccagCGTCAAGCTGgtattgaaccagcgaccttccgcatgggagtcggttgctctaccaaggagtaGAGCAACCATGGTAGACCATGCCCTCTAGCGTCTGtctctagagcacctttagaggtcagaggagtgaggtttacctgtttACTCTGTTACACTCAAcccccttaaacctcactcccatcctgggtttggcaccaatgtaaccccgccggtcctacaccacccaacccgctccaaaaTGCAAAGTTTCTGTCCATCTTGGATGAAGTCCTATACATTAATAGTCTTTTCTGAaacttcctttaacaaacggccgacgaATCCTCtattgtaagcgtgtagattgctaAAGCACTGGTGAGAAATAAgacgggaacacagcacaaggctggggctataatgctgagctatttttgcaaaaataaacttcaaccactgactcttcacagcctcttGTTGACTATTTTATAGATGAATTAATAggtttaaacacggtgcactttcagatataagccttagctggatatttcactttatttagagCTGTATTACACACTGTACGGAAGGTCATTTTCAGTAACccataacaggggctctttaactTCAAATTTGACAGTGCTTCGGCAGATTAACCAACCCACCTCACTCAATTACAAGGCATTTTAAAATCCTGTCTAATGGTTGAAAAGAAATGAGCCAGCACAGTCACTAAGAGGCTCTAATAGCTGTCTATCAAAATGTGGAGTGGATGATTTCCTGTGTTCCCTGAATTTAAATAACATGTTAAATAAAGACATTATGTTGCAGTATGCTGTAATTGTGTTTTCTGGAAGGGTCCACAGTACAAAGTATTTTAACAAGCTGAAAAACAgaatacaaatgtattattattaagtttgatatattaaatatattttaagggctttatttataaataaacagtcaAGTTCTTTCTACAGATGTATTAttcaattttatacatttttttatacacaaagcTTCTCCTCGACTTGTTTTCccaaaatacattatatataaaagttttttttatcattataatgTTTAACAACCATGCCATTATAAGTACATTtgcatataacaaaaaaaaagtgcaaaaaaggtaataaattacatacataaaaaacataacatttcataaaaaaatagcaaaatacaATGAGGGTTTTTCCTGTAGTTTATGCCTTTCTATAAAAGACAACATCAATTGGaggttttgttttcatgatcTTCAGGGcttttatatgtgttttatacacttactggccactttatcaggtacaccggtccaactgcttgttaatgcagtgactttaaatgtggcatggttgttgatgccagtcggagtatttcagaaactgctgatctactgggattttcatgcacaaccatctctagggttgtgcatcaaatctgcagcaactgcgtgatgctatcctgtcattatggagcaaaatctctgaggaatatttccagtaccttgttgaatctacaccatgaaggattaaggcagttctgaagacaaaaggggtccAATCCGTTACTAGTGAGGTGTAACCTTATAAACTTAAAAAGTACACCGGTGTGTACTTTTATATacaccggtgagtgtatataaaagTACTACATATACTGCTTACTAActgtttagttgttttttttattctctacTTGTATCATGATGTACTGTTGGCATGTTGTGTGATTTGTATTTCTGTTGTTGCAGTATGTGTTCATATGTTCATATCAAAATAACGCTGAGCTCGTCTCGATGTGATGACGTCATCAGCTGCGCGCGCTCCCGAGTCCTGTCAGGCGAGGTGAGTAGAACTGTTTACCCTATTTTGCTTGTTTACCCGATTGTAacgttattttttttactgttttacagtgtaaatgatTTTCGTCGAAAGTATTGTAGCTTATGCTCTTATTTTCGAGGGCTTTATGTGTCCATTTCGCATACTAAACACCAAATAACAGTTACAAGATAAGAAAGCAAGCTGTAATGCTGTGAATATGTTATaaggtttctttaaaaaaacatacatttggaTTAATGTTGACAATTAACATGGCTGCTGTTAGTTTCTGGGTGTTTTTAAGTGTCGTTTGAGaaactattattatatttcacacgATAAAGTGACCAGAGCCCATATTCACAAAACATCTTAAAGCTAAAAGCAGCTTTAATTGCGAGGTGTAAGCCCTAATTACAGTTATGACTCCTAAATATTtgctttaaatatgttttacaatgtgttttAGCACAATCTAACTCATAAATCAGTGAAACGTAAGCAACGAAGTGACTCAAGTCACTAGGATGAAACTGAAAACTATCTTTTGctatattttagaaacatttgagcacaataagcatttataaatgtgtaccctgctgaaaaatccagctcaaaccagcctaggctggtcggctggttttagctggtcgaccagcctggttttagaggggttttggccacttccaggctggtctccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaaccagcttgaccagcctagccaagctgggagtccagccaaaaccagcttaaaccaggctggttgagctggttttagctggatttggctggtcattttccagcctgaccagctaagaccagcctggaagtggccaaaacccctctaaaaccaggctggtcaaccagctaaaaccagccgaccagcctaggctggtttaagctggaattTTCAGCAGGGTATATGCAGGGGTTTtcttacatgttttaaaatatgtttacagtaaTGTCAAAATACGTGAAAAGGGAACAATttgtatttacaaaaaatatagtaATGCAAATATATGTTTTACAAATGCACCtcggaattataaggttctctctgcgttcggaATGATTTGAAGataatgagcttcaaagtttttgcattccatagcagacAGTATGCGTGTAAcatgtttttcaaataaaaagtcttaaaatgtaaacaacttataaaaaaaacatcccatcatgtaaataagttgtcattttatgagaatatgtcaataactcaattttgacaaaaatgtcagaagcttataattctaaggtgacgatatgtagcttcaaatttaaaaaaatgtttttatgtgtttttggcaaataatttttttaatgtgtaaaaatacttgaatatatttacatttgcaaTAAGTCATTTAGTAGACGCTGTTATCCACAGAGACTTAgaagtaggcctgtcacaatcaTCGATAAATGGAGTTGTTGTACTACACatcgacatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039787 lncRNA upstream 35 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 19243 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA upstream 54954 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039777 lncRNA upstream 116284 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 188756 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00041847 lncRNA downstream 262206 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 329069 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00042012 lncRNA downstream 508021 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 555169 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 555840 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039783 mRNA upstream 7134 1317353 ~ 1376970 (+) False XLOC_019943
TCONS_00039786 mRNA upstream 22956 1352192 ~ 1361148 (+) True XLOC_019946
TCONS_00039785 mRNA upstream 50539 1330477 ~ 1333565 (+) True XLOC_019945
TCONS_00039782 mRNA upstream 61136 1313046 ~ 1322968 (+) False XLOC_019943
TCONS_00039781 mRNA upstream 76961 1300587 ~ 1307143 (+) True XLOC_019942
TCONS_00039790 mRNA downstream 23231 1421212 ~ 1424483 (+) True XLOC_019949
TCONS_00039791 mRNA downstream 33762 1431743 ~ 1433028 (+) True XLOC_019950
TCONS_00039792 mRNA downstream 42721 1440702 ~ 1441490 (+) True XLOC_019951
TCONS_00039793 mRNA downstream 64196 1462177 ~ 1466567 (+) False XLOC_019952
TCONS_00039794 mRNA downstream 65016 1462997 ~ 1466525 (+) True XLOC_019952
TCONS_00039784 other upstream 54958 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039775 other upstream 121832 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 132444 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 344355 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 364952 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039812 other downstream 178882 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 232705 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 252147 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 262434 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039823 other downstream 263285 1661266 ~ 1665471 (+) True XLOC_019971

Expression Profile

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