XLOC_019993 (si:dkey-15h8.10)


Basic Information

Item Value
gene id XLOC_019993
gene name si:dkey-15h8.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1904546 ~ 1909424 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039851
ATGACGTCAGCACTGACGCGTTCATTCggcgtcgagtcttcagagctgagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagatgtgaaggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtca
>TCONS_00042012
tgaaggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGTGAAGAGCAAACTCAATCAGAGGCTGAAGacAGCCTCTCCCCACCCAATACAAAACTGTGTATGCACAGTGATGCACCGGGATATCGAATTGAAGCGAagcgatggcatgataatcgtaaccgaaccgtgataACAATGTCGTTCACACCTCTAATTTCGACATTGGAAGCATTGCCACCACAGCCAAGGAACATCCTATCTTGCTGTGGCTCAACATTACCTCTACGGCAAACGCATTGAGAAAAAGCCACAAGCAGACGTTGACAGGACTTGAGAGTCTGGGCAAAAAATTTGCTGCCAAAGCAGCAGAGCTGCGAAGGCTACAGTGTTTAACCCCAAgttcaaatgtatttgtttattaaaaatcaaatgtgTGTTACGCTGTTGTGTATGTATTAAATACAACTGacagtttaaataaaatgttttattcagtTCAAATAGTCACTTAATTATTTTCTAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104142

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039851 False 220 mRNA 0.46 3 1904546 1906058
TCONS_00042012 True 526 lncRNA 0.41 2 1906002 1909424

Neighbor

gene id symbol gene type direction distance location
XLOC_019992 znf1158 coding upstream 2841 1899142 ~ 1901705 (+)
XLOC_019990 si:dkey-15h8.17 coding upstream 6794 1868983 ~ 1897752 (+)
XLOC_019991 BX640576.1 coding upstream 23876 1878147 ~ 1880670 (+)
XLOC_019989 znf1174 coding upstream 42647 1853999 ~ 1861899 (+)
XLOC_019988 znf1182 coding upstream 55136 1846147 ~ 1849410 (+)
XLOC_019994 znf1156 coding downstream 1845 1911269 ~ 1919599 (+)
XLOC_019995 znf1181 coding downstream 12869 1922293 ~ 1925346 (+)
XLOC_019996 znf1153 coding downstream 21165 1930589 ~ 1935844 (+)
XLOC_019997 znf1167 coding downstream 31171 1940595 ~ 1945452 (+)
XLOC_019998 si:dkey-15h8.15 coding downstream 37252 1946676 ~ 1949027 (+)
XLOC_019977 BX649416.3 non-coding upstream 172436 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 239075 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 250608 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 326800 1576863 ~ 1577746 (+)
XLOC_020000 NA non-coding downstream 97817 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 250615 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 266433 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 327728 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 636662 2546086 ~ 2546878 (+)

Expression


Co-expression Network