XLOC_019989 (znf1174)


Basic Information

Item Value
gene id XLOC_019989
gene name znf1174
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1853999 ~ 1861899 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039844
ATGACGTCAGCGCTGACGCGTTCATccagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatagatgtggtggtgaaggaggagagtgaagaactgagtgaagatgaggagaagCATCATGTCAAAAGTGAAACCAAAACTGAACCAAACACTGAACATGGTGTTTCAGTGGAAAGAACGGACATAAAAGGTttgacctgcactcagtgtggaaagagtttaagCTCTAAATACGATCTCAAGcgtcacatgatgatccacactggagagaaacccttcaagtgttcacactgcgacaagacatTCAATCATTCAGGAAACCTGAATtcacacatgaagatccacactggggagaaaacacacacatgtgaTCAGTGCGGCAAAACTTTTTTGAGGCCTTCAGAGCTGAAGAATCATCTTAGAGTTCACACAAAGGAAAAGCTGTACTCATgttctgagtgtggaaagagttttggagtGCAGTCAAGTTTAAGAAAACATCAgcagatccacactggtgtgagagagtttgTCTGCTCTGAGTGTAAGAAGGCGTTTACTAGAGCTGATTACTTGAAAcagcaccagaggattcacacgggagagaaaccgtacgtgtgttcacactgcgacaagagattcagtctAGCTAGTTCCCTTAAATATCACAAAacaactcacactggagagacacCATtaacatgtactcagtgtgggaagagtttcacaaAAATATCACACCTTAACAAACACATGCCgctccacaccggagagaaaacacacagatGTGATCAATGCGGCAAAGCTTTTTTGAGGCCTTCACAGCTAAGGGTCCATCTTAGAAGTCATACAAATGAGAAGCCTTAGTTCTGCTCTCAGTGTATAAATAGTTAGACATCAGTCACATTTAAATGCACATCAgcagatccacactggtgtgagagagtttgtgtACTCTGAGTGTGAGAGgagttttaataaatctgcagaCTTGAGACGACACCAATTGATCCACACTGAAGAGAAGCCGTACGTGTGTTCAAACTGCGACAAAACATTCAGACATTCAGGACACCTGAAAACACACCAGAgtgttcacactggagagaaaccgttcacatgtacTCTGTAAGGATCATCATCTAT

Function

symbol description
znf1174 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-785 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

Ensembl:

ensembl_id ENSDARG00000100361

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039844 True 1242 mRNA 0.44 3 1853999 1861899

Neighbor

gene id symbol gene type direction distance location
XLOC_019988 znf1182 coding upstream 4589 1846147 ~ 1849410 (+)
XLOC_019987 znf1183 coding upstream 15423 1836782 ~ 1838576 (+)
XLOC_019986 znf1002 coding upstream 28185 1821718 ~ 1825814 (+)
XLOC_019985 znf1184 coding upstream 35436 1815408 ~ 1818563 (+)
XLOC_019984 znf1168 coding upstream 44466 1806235 ~ 1809533 (+)
XLOC_019990 si:dkey-15h8.17 coding downstream 7084 1868983 ~ 1897752 (+)
XLOC_019991 BX640576.1 coding downstream 16248 1878147 ~ 1880670 (+)
XLOC_019992 znf1158 coding downstream 37243 1899142 ~ 1901705 (+)
XLOC_019993 si:dkey-15h8.10 coding downstream 42647 1904546 ~ 1909424 (+)
XLOC_019994 znf1156 coding downstream 49370 1911269 ~ 1919599 (+)
XLOC_019977 BX649416.3 non-coding upstream 121889 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 188528 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 200061 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 276253 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 469930 1377331 ~ 1384069 (+)
XLOC_020000 NA non-coding downstream 145342 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 298140 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 313958 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 375253 2237152 ~ 2239093 (+)

Expression


Co-expression Network