Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00039793 |
| length | 955 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_019952 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 1462177 ~ 1466567 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-485 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530). |
| ensembl_id | ENSDART00000164685 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039787 | lncRNA | upstream | 78108 | 1377331 ~ 1384069 (+) | True | XLOC_019947 |
| TCONS_00042010 | lncRNA | upstream | 97316 | 1316752 ~ 1364861 (+) | True | XLOC_019944 |
| TCONS_00042011 | lncRNA | upstream | 133027 | 1317461 ~ 1329150 (+) | False | XLOC_019943 |
| TCONS_00039777 | lncRNA | upstream | 194357 | 1261725 ~ 1267820 (+) | True | XLOC_019938 |
| TCONS_00042009 | lncRNA | upstream | 266829 | 1194871 ~ 1195348 (+) | True | XLOC_019937 |
| TCONS_00041847 | lncRNA | downstream | 193620 | 1660187 ~ 1665471 (+) | False | XLOC_019971 |
| TCONS_00041848 | lncRNA | downstream | 260483 | 1727050 ~ 1732110 (+) | True | XLOC_019977 |
| TCONS_00042012 | lncRNA | downstream | 439435 | 1906002 ~ 1909424 (+) | True | XLOC_019993 |
| TCONS_00039862 | lncRNA | downstream | 486583 | 1953150 ~ 1954788 (+) | False | XLOC_019999 |
| TCONS_00039863 | lncRNA | downstream | 487254 | 1953821 ~ 1960320 (+) | False | XLOC_019999 |
| TCONS_00039792 | mRNA | upstream | 20687 | 1440702 ~ 1441490 (+) | True | XLOC_019951 |
| TCONS_00039791 | mRNA | upstream | 29149 | 1431743 ~ 1433028 (+) | True | XLOC_019950 |
| TCONS_00039790 | mRNA | upstream | 37694 | 1421212 ~ 1424483 (+) | True | XLOC_019949 |
| TCONS_00039789 | mRNA | upstream | 54321 | 1396444 ~ 1407856 (+) | True | XLOC_019948 |
| TCONS_00039788 | mRNA | upstream | 64196 | 1384104 ~ 1397981 (+) | False | XLOC_019948 |
| TCONS_00039795 | mRNA | downstream | 3118 | 1469685 ~ 1472261 (+) | True | XLOC_019953 |
| TCONS_00039796 | mRNA | downstream | 14421 | 1480988 ~ 1481831 (+) | False | XLOC_019954 |
| TCONS_00039797 | mRNA | downstream | 14740 | 1481307 ~ 1515020 (+) | True | XLOC_019954 |
| TCONS_00039798 | mRNA | downstream | 25097 | 1491664 ~ 1493106 (+) | True | XLOC_019955 |
| TCONS_00039799 | mRNA | downstream | 34999 | 1501566 ~ 1503133 (+) | False | XLOC_019956 |
| TCONS_00039784 | other | upstream | 133031 | 1323514 ~ 1329146 (+) | True | XLOC_019943 |
| TCONS_00039775 | other | upstream | 199905 | 1249788 ~ 1262272 (+) | False | XLOC_019938 |
| TCONS_00039776 | other | upstream | 210517 | 1250239 ~ 1251660 (+) | False | XLOC_019938 |
| TCONS_00039761 | other | upstream | 422428 | 1039548 ~ 1039749 (+) | True | XLOC_019930 |
| TCONS_00039759 | other | upstream | 443025 | 1018601 ~ 1019152 (+) | True | XLOC_019929 |
| TCONS_00039812 | other | downstream | 110296 | 1576863 ~ 1577746 (+) | True | XLOC_019963 |
| TCONS_00039818 | other | downstream | 164119 | 1630686 ~ 1633449 (+) | False | XLOC_019968 |
| TCONS_00039821 | other | downstream | 183561 | 1650128 ~ 1653938 (+) | True | XLOC_019970 |
| TCONS_00039822 | other | downstream | 193848 | 1660415 ~ 1661346 (+) | False | XLOC_019971 |
| TCONS_00039823 | other | downstream | 194699 | 1661266 ~ 1665471 (+) | True | XLOC_019971 |
