XLOC_019956 (zgc:173486)


Basic Information

Item Value
gene id XLOC_019956
gene name zgc:173486
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1501566 ~ 1511181 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039799
CGATTGTTTTTGTCCTGTCTAAGTGTTTTAGTTTGGCGTGTTGTTGAGCCTCCGTTGCTCCCGCCTCGCGGTGATGACGTCAGCGCTGACGCGTTCattcagcgtcgagtcttcagagctgagAGCTGAATGAAGACATGAAGAATCACTTAAATGTTCATTCAAAGATGAAGCGTTTTCTATGCACTTTGTGTGGAAAGAGCTACAATCATCCAAACAGTTTAAGAAGACATCAGATGGTCCACACTGGGGAGagaccttacaagtgttcacactgcggaAAAACATTCAATGACTCGGGGAGTCTAAAagcacatgagaggattcacactggagagaagccgtacacgtgtactcagtgtgggaagagtttcatacgATCGTCAGACCGTAATCGACACATGATGACCCACAGctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatag
>TCONS_00039800
ATGAAGAATCACTTAAATGTTCATTCAAAGATGAAGCGTTTTCTATGCACTTTGTGTGGAAAGAGCTACAATCATCCAAACAGTTTAAGAAGACATCAGATGGTCCACACTGGGGAGagaccttacaagtgttcacactgcggaAAAACATTCAATGACTCGGGGAGTCTAAAagcacatgagaggattcacactggagagaagccgtacacgtgtactcagtgtgggaagagtttcatacgATCGTCAGACCGTAATCGACACATGATGACCCACAGctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaggagactgaagaactaatagATGTGAAGGTGGagagtgaagatgaggagaaacatcatgtcaagaGTGAAGAAGAAACTCACACAAGCACTGAACACAGTGTTTTACTGAACAGCACAGCTGTAAAAGGTTTCGTCTGCACTCGGTGTGGAAAAAATTTTGGGCGAAAATTTGATCTCAAGCGTCACATgtggatccacactggagagaaaccgtacaagtgttcacaatGCGACAAGAAATTCTGTAAATTACAAGACCTGAAAACACACAAGAAGATTCACACTAAAGGGTTTCTCTGCATTgcctgtgggaagagtttcagggaTACATTTTCTCTACGAAGACACACGCACAAATCTCTTGAGCGTAACGAAGACATGAAGAATCACTTTAATGTTCATTCAACGATGAAACATTTTTCATGCTGTTTGTGTGGAAAGAGCTACAATCATCCACACAGTTTAAGAAGACATCAgacgatccacactggagagagaccttaCAAGTGTTCATATTGCGAGAAAACATTCAGTGAGTCAGGAAGTCTGAGATCAcacgagaggattcacactggagagaaaccgttcacatgtactcagtgtgggaagagtttcatacgGTCGTCAGACCGTAATCGACACATGATGACCCACAGCTCTGCCGCCATCaatgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaacaaacagAGGTGAAGGTGGAGAGTGAAGTACTGTGGGGAATcgaagatgaggagaaacatcatgtcaaaagtGAAGAAGAAACTCGCACAAACACAGATGGTAGTGTTTCAATGAACAGCACAGCTGTGAAAAGTTTagcctgcactcagtgtggaaagagattCAGCCGCAAATACGGTCTCATCATTCACATGAAGATCCACgccggagagaaaccttacaagtgttcccactgcgacaagagattcagtaaATTACGAGACCTGAAAGCACACAGGAAGATTCATCCCAAAGAGAAACCATATCGCTGCATAgcttgtgggaggagtttcatgGATATATTTATACTACAAACCCATACCAAAAAATTTCACGGTAAGTTGATCGTCTAA
>TCONS_00039801
AGAGCGTAACGAAGACATGAAGAATCACTTTAATGTTCATTCAACGATGAAACATTTTTCATGCTGTTTGTGTGGAAAGAGCTACAATCATCCACACAGTTTAAGAAGACATCAgacgatccacactggagagagaccttaCAAGTGTTCATATTGCGAGAAAACATTCAGTGAGTCAGGAAGTCTGAGATCAcacgagaggattcacactggagagaaaccgttcacatgtactcagtgtgggaagagtttcatacgGTCGTCAGACCGTAATCGACACATGATGACCCACAGCTCTGCCGCCATCaatgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaacaaacaggttg

Function

symbol description
zgc:173486 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000100544 ENSDARG00000103936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039799 False 525 mRNA 0.46 3 1501566 1503133
TCONS_00039800 False 1521 mRNA 0.43 6 1502561 1511181
TCONS_00039801 True 408 mRNA 0.43 2 1508545 1509112

Neighbor

gene id symbol gene type direction distance location
XLOC_019955 si:dkey-4c15.8 coding upstream 8460 1491664 ~ 1493106 (+)
XLOC_019953 zgc:174222 coding upstream 29305 1469685 ~ 1472261 (+)
XLOC_019952 si:dkeyp-53d3.5 coding upstream 34999 1462177 ~ 1466567 (+)
XLOC_019951 si:dkeyp-53d3.3 coding upstream 60076 1440702 ~ 1441490 (+)
XLOC_019950 BX322657.2 coding upstream 68538 1431743 ~ 1433028 (+)
XLOC_019957 si:ch211-255f4.5 coding downstream 6137 1517318 ~ 1524675 (+)
XLOC_019958 znf1183 coding downstream 14859 1526040 ~ 1606312 (+)
XLOC_019959 si:ch211-255f4.7 coding downstream 28192 1539373 ~ 1555366 (+)
XLOC_019960 si:ch211-255f4.8 coding downstream 45767 1556948 ~ 1557773 (+)
XLOC_019961 AL954741.2 coding downstream 49810 1560991 ~ 1567970 (+)
XLOC_019947 BX322657.1 non-coding upstream 117497 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 136705 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 233746 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 562739 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 683939 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 65682 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 138947 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 149006 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 214387 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 366966 1878147 ~ 1880670 (+)

Expression


Co-expression Network