Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00039789 |
| length | 1381 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_019948 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 1384104 ~ 1407856 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | description |
|---|---|
| ZDB-GENE-050320-55 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000160649 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039787 | lncRNA | upstream | 12375 | 1377331 ~ 1384069 (+) | True | XLOC_019947 |
| TCONS_00042010 | lncRNA | upstream | 31583 | 1316752 ~ 1364861 (+) | True | XLOC_019944 |
| TCONS_00042011 | lncRNA | upstream | 67294 | 1317461 ~ 1329150 (+) | False | XLOC_019943 |
| TCONS_00039777 | lncRNA | upstream | 128624 | 1261725 ~ 1267820 (+) | True | XLOC_019938 |
| TCONS_00042009 | lncRNA | upstream | 201096 | 1194871 ~ 1195348 (+) | True | XLOC_019937 |
| TCONS_00041847 | lncRNA | downstream | 252331 | 1660187 ~ 1665471 (+) | False | XLOC_019971 |
| TCONS_00041848 | lncRNA | downstream | 319194 | 1727050 ~ 1732110 (+) | True | XLOC_019977 |
| TCONS_00042012 | lncRNA | downstream | 498146 | 1906002 ~ 1909424 (+) | True | XLOC_019993 |
| TCONS_00039862 | lncRNA | downstream | 545294 | 1953150 ~ 1954788 (+) | False | XLOC_019999 |
| TCONS_00039863 | lncRNA | downstream | 545965 | 1953821 ~ 1960320 (+) | False | XLOC_019999 |
| TCONS_00039783 | mRNA | upstream | 19474 | 1317353 ~ 1376970 (+) | False | XLOC_019943 |
| TCONS_00039786 | mRNA | upstream | 35296 | 1352192 ~ 1361148 (+) | True | XLOC_019946 |
| TCONS_00039785 | mRNA | upstream | 62879 | 1330477 ~ 1333565 (+) | True | XLOC_019945 |
| TCONS_00039782 | mRNA | upstream | 73476 | 1313046 ~ 1322968 (+) | False | XLOC_019943 |
| TCONS_00039781 | mRNA | upstream | 89301 | 1300587 ~ 1307143 (+) | True | XLOC_019942 |
| TCONS_00039790 | mRNA | downstream | 13356 | 1421212 ~ 1424483 (+) | True | XLOC_019949 |
| TCONS_00039791 | mRNA | downstream | 23887 | 1431743 ~ 1433028 (+) | True | XLOC_019950 |
| TCONS_00039792 | mRNA | downstream | 32846 | 1440702 ~ 1441490 (+) | True | XLOC_019951 |
| TCONS_00039793 | mRNA | downstream | 54321 | 1462177 ~ 1466567 (+) | False | XLOC_019952 |
| TCONS_00039794 | mRNA | downstream | 55141 | 1462997 ~ 1466525 (+) | True | XLOC_019952 |
| TCONS_00039784 | other | upstream | 67298 | 1323514 ~ 1329146 (+) | True | XLOC_019943 |
| TCONS_00039775 | other | upstream | 134172 | 1249788 ~ 1262272 (+) | False | XLOC_019938 |
| TCONS_00039776 | other | upstream | 144784 | 1250239 ~ 1251660 (+) | False | XLOC_019938 |
| TCONS_00039761 | other | upstream | 356695 | 1039548 ~ 1039749 (+) | True | XLOC_019930 |
| TCONS_00039759 | other | upstream | 377292 | 1018601 ~ 1019152 (+) | True | XLOC_019929 |
| TCONS_00039812 | other | downstream | 169007 | 1576863 ~ 1577746 (+) | True | XLOC_019963 |
| TCONS_00039818 | other | downstream | 222830 | 1630686 ~ 1633449 (+) | False | XLOC_019968 |
| TCONS_00039821 | other | downstream | 242272 | 1650128 ~ 1653938 (+) | True | XLOC_019970 |
| TCONS_00039822 | other | downstream | 252559 | 1660415 ~ 1661346 (+) | False | XLOC_019971 |
| TCONS_00039823 | other | downstream | 253410 | 1661266 ~ 1665471 (+) | True | XLOC_019971 |
