RNA id: TCONS_00039794


Basic Information

Item Value
RNA id TCONS_00039794
length 888
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_019952
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1462177 ~ 1466567 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCCATCAGTAAAAGACAAAGCaaagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaatcaaacaggaagagactgaagaactaatagATGTGGTTGTGAAGGAGGAGATTGACGCACTCTGTGAACATGAGGAAAAACATGATGTCAAAAGGGAAAGCAAAACTCGAACTAATACTGCGAATAATAAAACTAGAAAGAAAAGTCCTTTCACCTGCTACCgctgtggaaagagtttcagggTCCAATACAATCTCAAGCTTCACATGTGGATTCACACTAGCAAGAAGCCCTATTACTGTTCATACTGCACAAAGGGATTCCTTCATGCAGAACATGTGATATTGCACGAGAGGAcacacaccggagagaaaccctaTCACTGCACTGTTTGTGGGACGAGATTCACAAGTCCATCTTCTCTAAGAACACACACTAAAAACCTTCACAACCAGATGGTGAAAAAGGAGGAGAGCGAAGACCTGAAAGATACAGTGAAGAAGCCTTATTCATGTTCTGAGTGTGAAAAGAGTTTTATTTGTGAGCCATATTTAAAAgcacatcagaagatccacaccggtCTGAAACCCCACGTGTGCTTCCAGTGTGAGAAGGCTTTTACTAGATCTGGAGACTTGAGGCGGCACGAGAGGACGCACGATGTGGAGAAACCATACAAATGTACTGAGTGCAAGCTGAGATTCAGACACCAAACAAAGCTCTTTGAACACATGACCGTCCACGCTGGAGACAAACCACACAAATGTAACCAATGCGACAGAGCGTTTTCCAGGGCTTCAAAGCTGAAGACCCATCTTAGATTTCATACAAATGGGAACTCTTATGTGTTCCTTTAGGAAAGAGGTTTGCACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-485 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

Ensembl:

ensembl_id ENSDART00000157476

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039787 lncRNA upstream 78928 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 98136 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA upstream 133847 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039777 lncRNA upstream 195177 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 267649 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00041847 lncRNA downstream 193662 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 260525 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00042012 lncRNA downstream 439477 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 486625 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 487296 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039792 mRNA upstream 21507 1440702 ~ 1441490 (+) True XLOC_019951
TCONS_00039791 mRNA upstream 29969 1431743 ~ 1433028 (+) True XLOC_019950
TCONS_00039790 mRNA upstream 38514 1421212 ~ 1424483 (+) True XLOC_019949
TCONS_00039789 mRNA upstream 55141 1396444 ~ 1407856 (+) True XLOC_019948
TCONS_00039788 mRNA upstream 65016 1384104 ~ 1397981 (+) False XLOC_019948
TCONS_00039795 mRNA downstream 3160 1469685 ~ 1472261 (+) True XLOC_019953
TCONS_00039796 mRNA downstream 14463 1480988 ~ 1481831 (+) False XLOC_019954
TCONS_00039797 mRNA downstream 14782 1481307 ~ 1515020 (+) True XLOC_019954
TCONS_00039798 mRNA downstream 25139 1491664 ~ 1493106 (+) True XLOC_019955
TCONS_00039799 mRNA downstream 35041 1501566 ~ 1503133 (+) False XLOC_019956
TCONS_00039784 other upstream 133851 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039775 other upstream 200725 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 211337 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 423248 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 443845 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039812 other downstream 110338 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 164161 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 183603 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 193890 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039823 other downstream 194741 1661266 ~ 1665471 (+) True XLOC_019971

Expression Profile

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