XLOC_020001 (znf1174)


Basic Information

Item Value
gene id XLOC_020001
gene name znf1174
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2032023 ~ 2034151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039869
atgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATtgtgaaggaggagagtgaagaactgagtGACGATGAGGAGAAGCATCATgtcaaaagtgaaagtgaaactcacacaaacaccgAACATAGTATTTCAGTGGAAGCAGCAGGCGTGAAaggtttcacctgcactcagtgtggaaagagttaccGAGACAAACACATTCTCAGgcatcacatgatgatccacactggagagaaaccttacaagtgttcacactgcgacaagggGTTCATTCGTTTAGGAAACCTGAAAACACACGagaggacccacactggagagaaaccacacAAGTGTGATCACTGCGGCAAGACCTTTTTTATTTCTTCAGATCTGAAGAAACATCTTCGAGTTCACACAAACGAGAAGCCGTATTCATGCGccgagtgtgggaagagtttcactcAGACGTCAAATTTAAAAGCACATCAGAGGATCCACACTGGCGTGAGGGAGTTTGTCTGCTCtgagtgcgggaagagtttcattACAGCTGCGCACTTGAAACTGCACCAgatgatccacaccggagagagacCGTACAAGTGCTCGCACTGCGAGAGGAGATTCAGTATGTTGCAATCAGTGAAAATACATGAgcggattcacactggagagaggccgttcGCATGTTCTCTGTGTGGGAAAGGTTTCACACAATCATCACACattaatcaacacatgaagatccacactggagagaaaacgcACAGGTGCGAGCAGTGCGGCAAAACATATTTCAATGCTTCAAATCTGAAAAACCATCTCAGAGTGCATACAGAAGCCTGTTAA

Function

symbol description
znf1174 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-785 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

Ensembl:

ensembl_id ENSDARG00000112145

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039869 True 855 mRNA 0.46 2 2032023 2034151

Neighbor

gene id symbol gene type direction distance location
XLOC_019999 zgc:174222 coding upstream 71251 1953096 ~ 1960772 (+)
XLOC_019998 si:dkey-15h8.15 coding upstream 82996 1946676 ~ 1949027 (+)
XLOC_019997 znf1167 coding upstream 86571 1940595 ~ 1945452 (+)
XLOC_019996 znf1153 coding upstream 96179 1930589 ~ 1935844 (+)
XLOC_019995 znf1181 coding upstream 106677 1922293 ~ 1925346 (+)
XLOC_020002 znf1144 coding downstream 76969 2111120 ~ 2118122 (+)
XLOC_020003 znf1155 coding downstream 86664 2120815 ~ 2125835 (+)
XLOC_020004 si:dkeyp-79b7.3 coding downstream 95233 2129384 ~ 2130429 (+)
XLOC_020005 znf1164 coding downstream 108956 2143107 ~ 2147839 (+)
XLOC_020006 BX640537.2 coding downstream 125888 2160039 ~ 2163446 (+)
XLOC_019991 BX640576.1 non-coding upstream 151353 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 299913 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 366552 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 378085 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 454277 1576863 ~ 1577746 (+)
XLOC_020007 BX640537.1 non-coding downstream 141706 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 203001 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 511935 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 597467 2631618 ~ 2631738 (+)

Expression


Co-expression Network