XLOC_020003 (znf1155)


Basic Information

Item Value
gene id XLOC_020003
gene name znf1155
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2120815 ~ 2125835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039877
GGGAGCACACGCCTCGCCGTGATGACGTCAGCGCTGACGCGTTCACccagcgtcgagtcttcagagctgagCTCTGCCGCCATCAGTGAAAGACAAAtgcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtgaagctgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAGACTGAAGATAGTTTTGTAATAGAAAGAACAGTAAGTGGTTTCACCTgcgctcagtgtggaaagagtttcaggcaCAAATACCATCTCAAGCGTCACATGAtcattcacactggagagaaaccgtaccagtgttcacactgcgacaagagattcggTGATTCAGGAAACCTGAATTCACACATGCTggtccacaccggagagaaaacacacaagtgTGATCAGTGCGGCAAAACATTTATGAGGTTTTCAGAGCTGAAGAGCCATCGAACAGTTCACACAAACAAAAAGCCGTACTCATGTTCTGAGTGCGGGAACAGTTTTAGTAATTGGTCAAATCTAAAAgcacatcagaagatccacactggcgtgagagagtttgtgtgctttgactgtgggaagagtttcatcagaGCTGGAGGGTTGAAAAatcaccagaggattcacaccggagagaaaccgtacaagtgttcacactgcgacaagagcttCAATCAGTTACAAATATTGAAAGTACATAGGAggactcacaccggagagaagccgtacacTTGTACTCACTGTGGGAAGAGCTTTAGACAATCGCCAAACTTTTATCGACACCtgctgatccacactggagagaaaccacacAAATGTGACCACTGCAGCAAAACATTTCTCTGGCCTTCAGAGCTGAAGGATCACCTCAGAGTTCATACAAACGAGAAGCCGTATGCATGCTCagaatgtgggaagagtttcactcAACAGTCAAATCTGAGACAACATCAGAAGATCCACGCTAGTGTGAGAAAGTTTGTGTGCTCGGAGTGTGGGAAGGCTTTTATTAAAGCCGTGAGTTTGAGACAGCACCAGACGATTCACACAGGAGAGAGACCGTACGTGTGTTTACAGTGCAACAAAACATTCAGAGATGCGGGATACCTGAAAGCGCATGAgcggatccacactggagagaagccgtacacGTGTACTCACTGTGGGAGGAGCTTTACAGTTTCATCATCTCTTAATTCACACatgctgatccacactggagagaaaacgcACAAATGTGATCAGTGCGACAAGACATTTTTGAGGGCTTCACAGCTGAAGAACCATCTTAGAGTTCATACAAAGTAGAAGCCTTTTCATTAAGAAATAGGTTTACACATCTGCAAAATTGACCTTGCTGAAAACTCTCTTCTGCATTCACAAACACaagattaataattaataattccctacatttatacagcacttttctaaacactcaaagcgctttacagaattgggggatctcctcatccaacaccagtgtgcagcatacaTCTGGATGAGGTGACGgtagccatattgcgccagacagcacaccagctgattggtggagaggagactgagtgatgaagccaaatatggttaggaggccatgatggacagaggccagtgagcaaatttggccaggatgccagggttaaacacCTTTTTTTGAAGGACACGCTGGGAtatttaatgaccacagacagtC
>TCONS_00039878
CCGTGATGACGTCAGCGCTGACGCGTTCACccagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgccgACCAAAACAATACTGCAGGCAGAGAGCAGCTCTGAGAGGACAATATGAAGTGTTTGTGCCTTACTTTATTTCTCTCTTTATTCTTCTGAAGCTCTGCCGCCATCAGTGAAAGACAAAtgcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtgaagctgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAGACTGAAGATAGTTTTGTAATAGAAAGAACAGTAAGTGGTTTCACCTgcgctcagtgtggaaagagtttcaggcaCAAATACCATCTCAAGCGTCACATGAtcattcacactggagagaaaccgtaccagtgttcacactgcgacaagagattcggTGATTCAGGAAACCTGAATTCACACATGCTggtccacaccggagagaaaacacacaagtgTGATCAGTGCGGCAAAACATTT
>TCONS_00039879
TGATGACGTCAGCGCTGACGCGTTCACccagcgtcgagtcttcagagctgagTGAAAGACAAAtgcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgttcattcattactCTTCAATAATGAGGCAGAACAACAGTGAGATGTGAAggtgaaggaggagagtgaagaactgagtgaagctgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAGACTGAAGATAGTTTTGTAATAGAAAGAACAGTAAGTGGTTTCACCTgcgctcagtgtggaaagagtttcaggcaCAAATACCATCTCAAGCGTCACATGAtcattcacactggagagaaaccgtaccagtgttcacactgcgacaagagattcggTGATTCAGGAAACCTGAATTCACACATGCTggtccacaccggagagaaaacacacaagtgTGATCAGTGCGGCAAAACATTTATGAG
>TCONS_00039880
CTGACGCGTTCACccagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacaCTCTGCCGCCATCAGTGAAAGACAAAtgcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtgaagctgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAGACTGAAGATAGTTTTGTAATAGAAAGAACAGTAAGTGGTTTCACCTgcgctcagtgtggaaagagtttcaggcaCAAATACCATCTCAAGCGTCACATGAtcattcacactggagagaaaccgtaccatgTGATCAGTGCGGCAAAACATTTATGAGGTTTTCAGAGCTGAAGAGCCATCGAACAGTTCACACAAACAAAAAGCCGTACTCATGTTCTGAG
>TCONS_00039881
ctttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgccgACCAAAACAATACTGCAGGCAGAGAGCAGCTCTGAGAGGACAATATGAAGTGTTTGTGCCTTACTTTGTTACTCTGCCGCCATCAGTGAAAGACAAAtgcagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtgaagctgaggagaaacatcatgtcaagaGGGAAGAAGAAACTCAATCAGAGACTGAAGATAGTTTTGTAATAGAAAGAACAGTAAGTGGTTTCACCTgcgctcagtgtggaaagagtttcaggcaCAAATACCATCTCAAGCGTCACATGAtcattcacactggagagaaaccgtaccagtgttcacactgcgacaagagattcggTGATTCAGGAAACCTGAATTCACACATGCTggtccacaccggagagaaaacacacaagtgTGATCAGTGCGGCAAAACATTTATGAGGTTTTCAGAGCTGAAGAGCCATCGAACAGTTCACACAAACAAAAAGCCGTACTCATGTTC

Function

symbol description
znf1155 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF322 (zinc finger protein 322) and ZNF621 (zinc finger protein 621).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-712 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF322 (zinc finger protein 322) and ZNF621 (zinc finger protein 621).

Ensembl:

ensembl_id ENSDARG00000100192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039877 False 1777 mRNA 0.45 3 2120815 2125835
TCONS_00039878 False 699 mRNA 0.44 3 2120831 2124562
TCONS_00039879 False 524 processed_transcript 0.44 3 2120834 2124567
TCONS_00039880 False 509 mRNA 0.44 4 2120848 2124631
TCONS_00039881 True 642 mRNA 0.43 3 2120933 2124627

Neighbor

gene id symbol gene type direction distance location
XLOC_020002 znf1144 coding upstream 2693 2111120 ~ 2118122 (+)
XLOC_020001 znf1174 coding upstream 86664 2032023 ~ 2034151 (+)
XLOC_019999 zgc:174222 coding upstream 160043 1953096 ~ 1960772 (+)
XLOC_019998 si:dkey-15h8.15 coding upstream 171788 1946676 ~ 1949027 (+)
XLOC_019997 znf1167 coding upstream 175363 1940595 ~ 1945452 (+)
XLOC_020004 si:dkeyp-79b7.3 coding downstream 3549 2129384 ~ 2130429 (+)
XLOC_020005 znf1164 coding downstream 17272 2143107 ~ 2147839 (+)
XLOC_020006 BX640537.2 coding downstream 34204 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 coding downstream 50022 2175857 ~ 2178463 (+)
XLOC_020008 znf1152 coding downstream 57275 2183110 ~ 2187088 (+)
XLOC_019991 BX640576.1 non-coding upstream 240145 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 388705 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 455344 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 466877 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 543069 1576863 ~ 1577746 (+)
XLOC_020013 NA non-coding downstream 111317 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 420251 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 505783 2631618 ~ 2631738 (+)

Expression


Co-expression Network