XLOC_020004 (si:dkeyp-79b7.3)


Basic Information

Item Value
gene id XLOC_020004
gene name si:dkeyp-79b7.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2129384 ~ 2130429 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039882
ttaagtgcattttaacaacattttaggTGTTTAATAAACAGCGCTTCACCCTACACGTGATTAAGACGGCTTTTTGTCTATATTTagcgattgttttttttttttttgacgcgtTTTGTTGATCTTCCGTTGCTCTCGCCTCGCCGTGATGACGTCACCGCTGACGCGTTCATccagcgtcgagtcttcagagctgagCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgt
>TCONS_00039883
tttgacgcgtTTTGTTGATCTTCCGTTGCTCTCGCCTCGCCGTGATGACGTCACCGCTGACGCGTTCATccagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactaCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatag
>TCONS_00039884
CCGTTGCTCTCGCCTCGCCGTGATGACGTCACCGCTGACGCGTTCATccagcgtcgagtcttcagagctgagCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgtttattcattactcttcAATAATGAGGCTGAAGAACAGTGAG
>TCONS_00039886
CCGTGATGACGTCACCGCTGACGCGTTCATccagcgtcgagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcgttgaattcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagagcagctctgagaggacaatatgagtgaatgtgtttgAatttgtctgtttgttctcCTGAAGCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgtttattcattactcttcAATAATGAGGCTGAAGAACAGTGAG
>TCONS_00039885
CCGTGATGACGTCACCGCTGACGCGTTCATccagcgtcgagtcttcagagctgagatttgtctgtttgttctcCTGAAGCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgtgtttattcattactcttcAATAATGAGGCTGAAGAACAGTGAG
>TCONS_00039887
ctttacagtttattaaagcgacaatctgcgactagtttctgcgttgaattcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagagcagctctgagaggacaatatgaatttgtctgtttgttctcCTGAAGCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgt
>TCONS_00039888
agtttattaaagcgacaatctgcgactagtttctgcgttgaattcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagagcagctctgagaggacaatatgagtgaatgtCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgt
>TCONS_00039889
gacaatctgcgactagtttctgcgttgaattcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagagcagctctgagaggacaatatgagtgaatgtATATGACATCATAATATGATTTAATCagatttgtctgtttgttctcCTGAAGCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039882 False 305 mRNA 0.42 2 2129384 2130386
TCONS_00039883 False 276 processed_transcript 0.45 2 2129488 2130380
TCONS_00039884 False 230 mRNA 0.47 2 2129510 2130429
TCONS_00039886 False 419 processed_transcript 0.43 2 2129527 2130429
TCONS_00039885 False 237 processed_transcript 0.44 2 2129527 2130429
TCONS_00039887 False 260 processed_transcript 0.42 2 2129629 2130386
TCONS_00039888 False 238 processed_transcript 0.42 2 2129635 2130386
TCONS_00039889 True 271 processed_transcript 0.41 2 2129648 2130380

Neighbor

gene id symbol gene type direction distance location
XLOC_020003 znf1155 coding upstream 3549 2120815 ~ 2125835 (+)
XLOC_020002 znf1144 coding upstream 11262 2111120 ~ 2118122 (+)
XLOC_020001 znf1174 coding upstream 95233 2032023 ~ 2034151 (+)
XLOC_019999 zgc:174222 coding upstream 168612 1953096 ~ 1960772 (+)
XLOC_019998 si:dkey-15h8.15 coding upstream 180357 1946676 ~ 1949027 (+)
XLOC_020005 znf1164 coding downstream 12678 2143107 ~ 2147839 (+)
XLOC_020006 BX640537.2 coding downstream 29610 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 coding downstream 45428 2175857 ~ 2178463 (+)
XLOC_020008 znf1152 coding downstream 52681 2183110 ~ 2187088 (+)
XLOC_020009 znf1165 coding downstream 58927 2189356 ~ 2389563 (+)
XLOC_019991 BX640576.1 non-coding upstream 248714 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 397274 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 463913 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 475446 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 551638 1576863 ~ 1577746 (+)
XLOC_020013 NA non-coding downstream 106723 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 415657 2546086 ~ 2546878 (+)
XLOC_020038 CU896630.1 non-coding downstream 501189 2631618 ~ 2631738 (+)

Expression


Co-expression Network