RNA id: TCONS_00039888


Basic Information

Item Value
RNA id TCONS_00039888
length 238
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_020004
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2129384 ~ 2130429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtttattaaagcgacaatctgcgactagtttctgcgttgaattcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagagcagctctgagaggacaatatgagtgaatgtCTCTGCAGCAATcgtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaataggtttgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165094

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 169315 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 169315 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 169315 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 169477 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 174847 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00041852 lncRNA downstream 40356 2170742 ~ 2207216 (+) False XLOC_020000
TCONS_00041853 lncRNA downstream 59005 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00039913 lncRNA downstream 65577 2195963 ~ 2206816 (+) False XLOC_020000
TCONS_00042013 lncRNA downstream 106766 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 107234 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00039877 mRNA upstream 3800 2120815 ~ 2125835 (+) False XLOC_020003
TCONS_00039880 mRNA upstream 5004 2120848 ~ 2124631 (+) False XLOC_020003
TCONS_00039881 mRNA upstream 5008 2120933 ~ 2124627 (+) True XLOC_020003
TCONS_00039878 mRNA upstream 5073 2120831 ~ 2124562 (+) False XLOC_020003
TCONS_00039874 mRNA upstream 11513 2111120 ~ 2118122 (+) False XLOC_020002
TCONS_00039890 mRNA downstream 12721 2143107 ~ 2147839 (+) False XLOC_020005
TCONS_00039891 mRNA downstream 12735 2143121 ~ 2147251 (+) False XLOC_020005
TCONS_00039893 mRNA downstream 12837 2143223 ~ 2147827 (+) False XLOC_020005
TCONS_00039894 mRNA downstream 12856 2143242 ~ 2147834 (+) False XLOC_020005
TCONS_00039895 mRNA downstream 13892 2144278 ~ 2147608 (+) False XLOC_020005
TCONS_00039879 other upstream 5068 2120834 ~ 2124567 (+) False XLOC_020003
TCONS_00039875 other upstream 11632 2111200 ~ 2118003 (+) False XLOC_020002
TCONS_00039866 other upstream 169315 1955496 ~ 1960320 (+) False XLOC_019999
TCONS_00039865 other upstream 169477 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039861 other upstream 175699 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039892 other downstream 12781 2143167 ~ 2144285 (+) False XLOC_020005
TCONS_00039898 other downstream 29653 2160039 ~ 2163446 (+) True XLOC_020006
TCONS_00039900 other downstream 40504 2170890 ~ 2172454 (+) False XLOC_020000
TCONS_00039904 other downstream 41070 2171456 ~ 2172523 (+) False XLOC_020000
TCONS_00039905 other downstream 45471 2175857 ~ 2178436 (+) False XLOC_020007