RNA id: TCONS_00039913


Basic Information

Item Value
RNA id TCONS_00039913
length 1537
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_020000
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2007241 ~ 2290657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgacaccattaccctaaaaatatcatctttttttggtaatacagcctataaatatgtagctaagatactaaaacactttcattttcactttcaaacaggagctatttcacggcacagaatatgctgttctgaaagatatctgaagtaaattgatgtttttgccatcagaaagttttgtttatgctagcaggaagttgctaggcaagaaaatgcacacatatttaaagtcacagcgaaaaggatcagacatgcatgcagtcattttgaccaatatggtaatttagggcagaaatgctcagttctttactgttttgtaacaaaaaataataataataacaatgtcagaaagaaatacactgatagttagaaaacggcagggtgttatttgttagttttatttcaaagagttatacaattacaaaaattaaaaactctctgtgtatctatccactggaacctgcagatgagtgattaatccgctgataaatcagctgatttgatgatgtttttaaatgctttcttcaaagcttgaaacgctgtcagtgatgtaatccgcacacaagcagccaatagtgttcagctttttctgacgactcctccctcaaattttcattggctgtggtttggtagcttgaatgagctgatggggaatgagttgttatcagatcatgtagtgtgtgacccccctcttgtggattattcacggagtgttgcgtagtgtgaacaccacagagatcaaaagacacaaagtcaagtcatgtagtgtgaacggcacagcgatctgctgatgtttaaaatcctgtagtgtgaaccaGGCTTTAAGTTATAATGAGATTTTAGCAATATTGAGTTTAAATTTTACCTCATACTTGGGTCATTTAGGCCTAATTGTACCCTTTAAGCCCTTACCTGTCCCAACAACATGCCTCCAAAACTGACTAAGGAGACCCACTAATGTAAAAAAGGAGCTGTGATGTTCAGTAAAGATGGATGGTTTAtgctttctttaaaaacaaaataaaagattgtgcATATTTAGGATTGTTTTAGGGGTGATAATTCACATAAACAAAGCCAAACAAATATCTTTGGTTTGAACGTTTACTACTAAATGATGTGAACATCCTTACGATCACTCATTTTGATGcaacaatacaaattaaattgtGTAACTCGGGTTTTCTCAGCAGTCCATTATGCATGGGAATGTTTAATGGGCCATGAGTATTTAGTAGATTCAGACCAGGGCAGGCAAGGAACTTCCCCAATCAATgctaatgttcacccatcaaGAGGAAATGCTGTGaactgctgtcgccactggcttgcatggttcgtgACCTGTGGAgctgcgtatcgatggatttgctcttcagtgtttgaactctcagcagttaatattaaatcacactaaactgaacttcaactctaaaaactggacttacaccgtttcagtttactataactgtctatgtaaagctgctgtgactcaatcttcattgtaaaagcgctattgaaataaagatgaatgGAGTTG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000160460

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 235643 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 235643 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 235643 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 235805 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 241175 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00042013 lncRNA downstream 30336 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 30804 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00041855 lncRNA downstream 48195 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00041856 lncRNA downstream 48900 2255716 ~ 2340398 (+) False XLOC_020009
TCONS_00042015 lncRNA downstream 64401 2271217 ~ 2275880 (+) False XLOC_020000
TCONS_00039912 mRNA upstream 1625 2193458 ~ 2194338 (+) False XLOC_020009
TCONS_00039911 mRNA upstream 2180 2189356 ~ 2193783 (+) False XLOC_020009
TCONS_00039910 mRNA upstream 2214 2189356 ~ 2193749 (+) False XLOC_020009
TCONS_00039907 mRNA upstream 8875 2183110 ~ 2187088 (+) False XLOC_020008
TCONS_00039908 mRNA upstream 8891 2183229 ~ 2187072 (+) False XLOC_020008
TCONS_00039918 mRNA downstream 686 2207502 ~ 2210242 (+) False XLOC_020010
TCONS_00039923 mRNA downstream 11123 2217939 ~ 2223648 (+) False XLOC_020011
TCONS_00039924 mRNA downstream 11214 2218030 ~ 2224093 (+) True XLOC_020011
TCONS_00039925 mRNA downstream 22103 2228919 ~ 2235192 (+) False XLOC_020012
TCONS_00039926 mRNA downstream 23148 2229964 ~ 2235260 (+) True XLOC_020012
TCONS_00039909 other upstream 8963 2183810 ~ 2187000 (+) True XLOC_020008
TCONS_00039906 other upstream 17500 2175857 ~ 2178463 (+) True XLOC_020007
TCONS_00039905 other upstream 17527 2175857 ~ 2178436 (+) False XLOC_020007
TCONS_00039904 other upstream 23440 2171456 ~ 2172523 (+) False XLOC_020000
TCONS_00039900 other upstream 23509 2170890 ~ 2172454 (+) False XLOC_020000
TCONS_00039919 other downstream 690 2207506 ~ 2210550 (+) False XLOC_020010
TCONS_00039920 other downstream 690 2207506 ~ 2210578 (+) False XLOC_020010
TCONS_00039921 other downstream 1219 2208035 ~ 2210262 (+) True XLOC_020010
TCONS_00039922 other downstream 11119 2217935 ~ 2224063 (+) False XLOC_020011
TCONS_00039929 other downstream 32458 2239274 ~ 2241777 (+) False XLOC_020014

Expression Profile

//