RNA id: TCONS_00039867


Basic Information

Item Value
RNA id TCONS_00039867
length 731
lncRNA type sense_over
GC content 0.43
exon number 4
gene id XLOC_019999
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1953096 ~ 1960772 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccgtgatgacgtcagtgcttacgcgttcattcagcgtcgagtctgcagagctgagcaggcagagaggagctctgagaggacaatatgagtgaatgtgtttATATAACATCATAATGTGTTTGTTCTCCTGAAGCTCTGCTGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAtggtgaaggaggagagtgaaggACTGAGTGAAGATGaagagaaacatcatgtcaagaGTGAAGAAGACACTCAATCAGAGACTGAAGATAATTTTTCAGTGGAAAGAACAGCTGTGAAATGTttgacctgcactcagtgtggaaagaggtTAAGCTCCAAATctaatcttaagattcacatgatgatccacagtggagagaaacccttcaagtgttcacactgcgacatgaGGTTCAATCGTTTAGCAATCCTGAAATCCCACgagagaactcacactggagagaaaccgtacaagtgttcacactgcgacaagagatttaATTTTTCAGACAGCTTAAAAACACACATGCTgctccacactggagagaaaccacacCAATGTGATCAATGCGGCAAAGCATATTTATGGCCTTCGGGGCTGAAGAGCCATCTTAGAGTTCACACAAACAAGAAGCTTTATTTATGTCctgtgtgtggaaag

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039862 lncRNA upstream 724 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00042012 lncRNA upstream 46088 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00041848 lncRNA upstream 223402 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 290041 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 571443 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00041849 lncRNA downstream 46921 2007241 ~ 2207216 (+) False XLOC_020000
TCONS_00041850 lncRNA downstream 88246 2048566 ~ 2207216 (+) False XLOC_020000
TCONS_00041851 lncRNA downstream 130456 2090776 ~ 2207216 (+) False XLOC_020000
TCONS_00041852 lncRNA downstream 210422 2170742 ~ 2207216 (+) False XLOC_020000
TCONS_00041853 lncRNA downstream 229071 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00039859 mRNA upstream 6485 1947494 ~ 1949027 (+) True XLOC_019998
TCONS_00039857 mRNA upstream 10060 1940595 ~ 1945452 (+) True XLOC_019997
TCONS_00039855 mRNA upstream 19668 1930589 ~ 1935844 (+) False XLOC_019996
TCONS_00039854 mRNA upstream 30166 1922293 ~ 1925346 (+) True XLOC_019995
TCONS_00039853 mRNA upstream 35916 1911335 ~ 1919596 (+) True XLOC_019994
TCONS_00039869 mRNA downstream 71703 2032023 ~ 2034151 (+) True XLOC_020001
TCONS_00039870 mRNA downstream 80134 2040454 ~ 2107440 (+) False XLOC_020000
TCONS_00039871 mRNA downstream 88246 2048566 ~ 2107440 (+) False XLOC_020000
TCONS_00039872 mRNA downstream 98074 2058394 ~ 2107440 (+) False XLOC_020000
TCONS_00039873 mRNA downstream 140454 2100774 ~ 2107607 (+) False XLOC_020000
TCONS_00039861 other upstream 1576 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039858 other upstream 6563 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039856 other upstream 20462 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039847 other upstream 74842 1878149 ~ 1880670 (+) True XLOC_019991
TCONS_00039846 other upstream 75532 1878147 ~ 1879980 (+) False XLOC_019991
TCONS_00039875 other downstream 150880 2111200 ~ 2118003 (+) False XLOC_020002
TCONS_00039879 other downstream 160514 2120834 ~ 2124567 (+) False XLOC_020003
TCONS_00039883 other downstream 169168 2129488 ~ 2130380 (+) False XLOC_020004
TCONS_00039886 other downstream 169207 2129527 ~ 2130429 (+) False XLOC_020004
TCONS_00039885 other downstream 169207 2129527 ~ 2130429 (+) False XLOC_020004

Expression Profile

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