RNA id: TCONS_00039873


Basic Information

Item Value
RNA id TCONS_00039873
length 1401
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_020000
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2007241 ~ 2290657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attcagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATCTGAAGGTGAAGAGTGAAGaactgagtgaagatgaggagaaaccgtaccagtgttcacactgcgacatgaGATTTTGTGATTTAGGAAACTTGAATTCGCAtaagaagatccacactggagagaaaacacacaagtgTGATCAATGCGGCAAAACATTTATGATGCCTTCACAGCTGAAGACCCATCTTAGAGTtcatacaaaggagaagccttattcatgctctgagtgcgggaagagtttcagacgtCTGTCAAATTTAAAAGcgcatcagaagatccacaccggtGTGAAAGAGCATGTGTGCattgagtgtgggaagagtttcatcagaGCTGGAGAATTGAAAAatcaccagaggattcacaccggagagaaaccgtacaagtgttcacactgcgaccgGAGATTCGGTCAGTTACAAATAGTGAAAGTACATGAGAggactcacaccggagagaagccgtacgCTTgtactcaatgtgggaagagctTCAAACAATCACCAAGCTTTTATCGACACATgcagatccacactggagagagaccgcaTACATGTGATCACTGCAGCAAAACTTTTCTCTGGCCTTCAGACCTGACGAGACATCTGAGAGATCACACAAACGAGAAGCCTTATGCATGCTCAGAATGTGGAAAGAGATATACAGAGCAGTCAACCTTGAGAAGACATCAGAAGATGCACACCGGTGTCAAAGAGTTTgcgtgctttgagtgtgagaagagttttatTAGAGCTGCGGGTTTGAGACAACAccagaggactcacactggagagaaaccgtacgtgtgttcacactgcaacaaAACGTTCAGATATTCAGGACACCTGAAAGCGCATGAgcggatccacactggagagaaaccgtacacttgtactcagtgtgggaagagtttcagcgtTTCATCGTCTCTTAATTCACACatgctgatccacactggagagaaaattCACAGATGTGAACAGTGTGGCAAGACATTTTTGAGGGCTTCACAGGTAAAGAAACACCTTAGAGTTCATACGAAGGAGAAGCCTTTTCAAAACATTGACCTTCCTGAAAACTCTCTTCTGCATTAACAAACACAGGATTTCACTGTTAAATGTGCGTAACAAGTCTGATCCTTGCAGTGAAGACATCTCAAGGGTTGATGTAGACTAATAAGGTCAGAAAATCCAGCGGTGCTGTGGAATATATCATTTCTGTGACTGCActgttttatacattaaaaaaataaacgttaCCT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000106436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 140454 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 140454 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 140454 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 140616 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 145986 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00041852 lncRNA downstream 63135 2170742 ~ 2207216 (+) False XLOC_020000
TCONS_00041853 lncRNA downstream 81784 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00039913 lncRNA downstream 88356 2195963 ~ 2206816 (+) False XLOC_020000
TCONS_00042013 lncRNA downstream 129545 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 130013 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00039869 mRNA upstream 66623 2032023 ~ 2034151 (+) True XLOC_020001
TCONS_00039860 mRNA upstream 140002 1953096 ~ 1960772 (+) False XLOC_019999
TCONS_00039859 mRNA upstream 151747 1947494 ~ 1949027 (+) True XLOC_019998
TCONS_00039857 mRNA upstream 155322 1940595 ~ 1945452 (+) True XLOC_019997
TCONS_00039855 mRNA upstream 164930 1930589 ~ 1935844 (+) False XLOC_019996
TCONS_00039874 mRNA downstream 3513 2111120 ~ 2118122 (+) False XLOC_020002
TCONS_00039876 mRNA downstream 4213 2111820 ~ 2117764 (+) True XLOC_020002
TCONS_00039877 mRNA downstream 13208 2120815 ~ 2125835 (+) False XLOC_020003
TCONS_00039878 mRNA downstream 13224 2120831 ~ 2124562 (+) False XLOC_020003
TCONS_00039880 mRNA downstream 13241 2120848 ~ 2124631 (+) False XLOC_020003
TCONS_00039866 other upstream 140454 1955496 ~ 1960320 (+) False XLOC_019999
TCONS_00039865 other upstream 140616 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039861 other upstream 146838 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039858 other upstream 151825 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039856 other upstream 165724 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039875 other downstream 3593 2111200 ~ 2118003 (+) False XLOC_020002
TCONS_00039879 other downstream 13227 2120834 ~ 2124567 (+) False XLOC_020003
TCONS_00039883 other downstream 21881 2129488 ~ 2130380 (+) False XLOC_020004
TCONS_00039886 other downstream 21920 2129527 ~ 2130429 (+) False XLOC_020004
TCONS_00039885 other downstream 21920 2129527 ~ 2130429 (+) False XLOC_020004

Expression Profile

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