RNA id: TCONS_00039925


Basic Information

Item Value
RNA id TCONS_00039925
length 1471
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_020012
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2228919 ~ 2235260 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCCTCGCCGTGATGACGTCAGCACTGACGCGTTCattcagcgtcgagtcttcagagctgagctctgccaccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagtctgaagaactaatagATGTGCTGGTGGAGAAGGAGAGTGAAGCTGAGGAGAAACATCAGGTCAAAAGTGAAACTGAAACTCGCACAAAGGACAAACACAACTctataatgaaaagaaaagattTCACCTGCACTCAATGTGGAAGGAGTTTCAGCCAGAAACACGACCTCAACGTTCACATGTTGATCCACATTGGAGAGAAACCCTACATGTGTTCACACTGCGGCAAGAGATTCAATCGTTCAGGACATCTGAAAAGACATGAGATGatgcacactggagagaaaccgcacAAGTGTGATCAATGCGGCAAATTATTTCCATGGCCTTCAGATCTGAAGACCCATCTTAGAGTTCACACAAACGAGAGGCCGTATTCCTgctctgagtgtggaaagagtttcacatATCTGTCACATTTAAAAGgccatcagaagatccacactggtgagAAAGCGTTTGTGTGctctgagtgtgggaagagttttattaAATCTGGAGACTTGAAACAACACCAGAttattcacaccggagagaaaccgttcatatgtactgtgtgtgggATGAGCTTTAGGCAATCATCACATCTTCATCAACACAagctgatccacactggagacaAAACACACAAGTGTGATCAGTGCGGCAAAACATTTCTGAGGACTTCAGATCTGAAGAACCATCTTAGTGTTCACACACAGGAGAAACCTCATTCGTgttctgagtgtggaaagagttttaaacgTTTGCGAGAGTTAAATTTGCATCAGCAGATGCACACTGGTGTGAGGGAGTTTGTGTGCATCgagtgtgagaagagttttatTCGAGCTAGAGACTTGAGACGACaccagaagatccacactggagagaaaccgaacaagtgttcacactgcgacaagagattcattCAAAAAGCACATCTCAAAACACATGAGAGCActcacactgaagagaaacccTACACATGTGCTcaatgcgggaagagtttcagagCTTCATTTCTCCTTAATTTACACATCCTGCGCCACGCTGAAAGGAAAAACCACAAATGTGATCAATGCGACAAAACATTTTTGAGGGCTTCAGAGCTGAGGAAACATTTTCTAGCTCATACACAGGAGAAGCCTCATTCATGTTCATGTTAAGAAACGGTAAACAGCACTAGCTACGTTTTCATCCAcctgtttttatgtgtgtttggGAGATGCGCATAACTGAGGAGAATAAACTTtctattcgataagaaaagatgcaataGAAACACTTTCAGATCAAATTCCAGTATTTGCTTTAAAAACTTTGTTATCAGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000133475

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041849 lncRNA upstream 21703 2007241 ~ 2207216 (+) False XLOC_020000
TCONS_00041850 lncRNA upstream 21703 2048566 ~ 2207216 (+) False XLOC_020000
TCONS_00041851 lncRNA upstream 21703 2090776 ~ 2207216 (+) False XLOC_020000
TCONS_00041852 lncRNA upstream 21703 2170742 ~ 2207216 (+) False XLOC_020000
TCONS_00039913 lncRNA upstream 22103 2195963 ~ 2206816 (+) False XLOC_020000
TCONS_00042013 lncRNA downstream 1960 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 2428 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00041855 lncRNA downstream 19819 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00041856 lncRNA downstream 20524 2255716 ~ 2340398 (+) False XLOC_020009
TCONS_00042015 lncRNA downstream 36025 2271217 ~ 2275880 (+) False XLOC_020000
TCONS_00039924 mRNA upstream 4826 2218030 ~ 2224093 (+) True XLOC_020011
TCONS_00039923 mRNA upstream 5271 2217939 ~ 2223648 (+) False XLOC_020011
TCONS_00039918 mRNA upstream 18677 2207502 ~ 2210242 (+) False XLOC_020010
TCONS_00039915 mRNA upstream 26216 2198323 ~ 2202703 (+) False XLOC_020000
TCONS_00039916 mRNA upstream 26313 2198411 ~ 2202606 (+) False XLOC_020000
TCONS_00039927 mRNA downstream 4062 2239254 ~ 2241860 (+) False XLOC_020014
TCONS_00039928 mRNA downstream 4079 2239271 ~ 2241776 (+) False XLOC_020014
TCONS_00039930 mRNA downstream 4782 2239974 ~ 2242861 (+) True XLOC_020014
TCONS_00039931 mRNA downstream 12453 2247645 ~ 2251297 (+) False XLOC_020015
TCONS_00039932 mRNA downstream 12474 2247666 ~ 2251185 (+) True XLOC_020015
TCONS_00039922 other upstream 4856 2217935 ~ 2224063 (+) False XLOC_020011
TCONS_00039920 other upstream 18341 2207506 ~ 2210578 (+) False XLOC_020010
TCONS_00039919 other upstream 18369 2207506 ~ 2210550 (+) False XLOC_020010
TCONS_00039921 other upstream 18657 2208035 ~ 2210262 (+) True XLOC_020010
TCONS_00039909 other upstream 41919 2183810 ~ 2187000 (+) True XLOC_020008
TCONS_00039929 other downstream 4082 2239274 ~ 2241777 (+) False XLOC_020014
TCONS_00039935 other downstream 34203 2269395 ~ 2274734 (+) False XLOC_020000
TCONS_00039942 other downstream 93107 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00039951 other downstream 149135 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039952 other downstream 150192 2385384 ~ 2389251 (+) True XLOC_020009

Expression Profile

//