RNA id: TCONS_00039894


Basic Information

Item Value
RNA id TCONS_00039894
length 580
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_020005
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2143107 ~ 2147839 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcgGAGAGAAGCTCTGAGAGGACAATATGAGTGAAGTGTTTACTTATGTCAGTGTTGTCACAGTCGACTCTTAAGCTTCAACAACTCTGCTGTCATCAGTGAAAaacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATGGTGAAGGAGGAGAGCGAAGaactgagtgaagatgaggagaaacatcatgtcaagaCTGAAAATGTTACTCGCACGAAGACTGAAGAtagttttgtaatggaaagaacAGCCGTGAAATGTTTCACCTGCacccagtgtggaaagagtttcagccacgAATGCTATCTCAAGcgacacatgaggatccacactggggaGAGACCGCACAAGTGTGATCAGTGCGGGAAAACATTTTCGAGGCCTTCAGATCTGAAGAGACATCTTCGACTtcatacaaaggagaagccttattcatgttctgagtgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039863 lncRNA upstream 182922 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA upstream 182922 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039867 lncRNA upstream 182922 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039868 lncRNA upstream 183084 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039862 lncRNA upstream 188454 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00041852 lncRNA downstream 22908 2170742 ~ 2207216 (+) False XLOC_020000
TCONS_00041853 lncRNA downstream 41557 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00039913 lncRNA downstream 48129 2195963 ~ 2206816 (+) False XLOC_020000
TCONS_00042013 lncRNA downstream 89318 2237152 ~ 2239093 (+) False XLOC_020013
TCONS_00041854 lncRNA downstream 89786 2237620 ~ 2239093 (+) True XLOC_020013
TCONS_00039884 mRNA upstream 12813 2129510 ~ 2130429 (+) False XLOC_020004
TCONS_00039882 mRNA upstream 12856 2129384 ~ 2130386 (+) False XLOC_020004
TCONS_00039880 mRNA upstream 18611 2120848 ~ 2124631 (+) False XLOC_020003
TCONS_00039881 mRNA upstream 18615 2120933 ~ 2124627 (+) True XLOC_020003
TCONS_00039878 mRNA upstream 18680 2120831 ~ 2124562 (+) False XLOC_020003
TCONS_00039899 mRNA downstream 23053 2170887 ~ 2172529 (+) False XLOC_020000
TCONS_00039901 mRNA downstream 23059 2170893 ~ 2172189 (+) False XLOC_020000
TCONS_00039902 mRNA downstream 23082 2170916 ~ 2172559 (+) False XLOC_020000
TCONS_00039903 mRNA downstream 23155 2170989 ~ 2172252 (+) False XLOC_020000
TCONS_00039907 mRNA downstream 35276 2183110 ~ 2187088 (+) False XLOC_020008
TCONS_00039886 other upstream 12813 2129527 ~ 2130429 (+) False XLOC_020004
TCONS_00039885 other upstream 12813 2129527 ~ 2130429 (+) False XLOC_020004
TCONS_00039887 other upstream 12856 2129629 ~ 2130386 (+) False XLOC_020004
TCONS_00039888 other upstream 12856 2129635 ~ 2130386 (+) False XLOC_020004
TCONS_00039883 other upstream 12862 2129488 ~ 2130380 (+) False XLOC_020004
TCONS_00039898 other downstream 12205 2160039 ~ 2163446 (+) True XLOC_020006
TCONS_00039900 other downstream 23056 2170890 ~ 2172454 (+) False XLOC_020000
TCONS_00039904 other downstream 23622 2171456 ~ 2172523 (+) False XLOC_020000
TCONS_00039905 other downstream 28023 2175857 ~ 2178436 (+) False XLOC_020007
TCONS_00039906 other downstream 28023 2175857 ~ 2178463 (+) True XLOC_020007

Expression Profile

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