RNA id: TCONS_00042016


Basic Information

Item Value
RNA id TCONS_00042016
length 582
lncRNA type read_through
GC content 0.46
exon number 2
gene id XLOC_020033
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2546086 ~ 2546878 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGTTGGAGCGAGACATGATGTACAACATGTGCTCAGTTGGATTCAGGTTTGGGGAACGGGCGGGCCAATCCATAGCATAAATGCCTTTATCTTGCAGGAACTGCTGACATGCTCCAGCCACATGAGGTCTAGCATTGTCTTGCATTGGGATGAACCCAAGGTCTGCTGCACCAGCATATGGTGTCACATGGCGTCTGAGGATCTCTTCTCGGTACCTAAAGGTAGTGTAGCTACCTCTGGCGTGCACATGAAGGGCTGTGCGGCCCTGCAAAGAAATGCCATCCCACACTATTATTGACCCGCTGACAAACCAGTCATTCTGGGGGATGTTGCACATGTGCGATTGTCTTGTTTTAacagtatttaaaaatggtgcttcctGTGTTGTCGTTTCTATTCTTGCGCATAAGTAacgattctctgtaaaccaataaacGTTTAGCAGTGAGTCCAAACTTAAACAAACCTTATCATCTTCATGAATAGCCAAAAAGCCAAGAAGACAAGCATAACCTGCTGTGTGTCATGTTGTTTACAAGGGCGTCCAAAAAAGCTTGAGTGATTTCACTCTCTCCAATG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041853 lncRNA upstream 156523 2189391 ~ 2389563 (+) False XLOC_020009
TCONS_00041855 lncRNA upstream 156523 2255011 ~ 2389563 (+) False XLOC_020009
TCONS_00039949 lncRNA upstream 156523 2368904 ~ 2389563 (+) False XLOC_020009
TCONS_00039950 lncRNA upstream 160119 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00041857 lncRNA upstream 202434 2307185 ~ 2343652 (+) False XLOC_020009
TCONS_00041858 lncRNA downstream 55799 2602677 ~ 2621601 (+) True XLOC_020037
TCONS_00042017 lncRNA downstream 245697 2792575 ~ 2793561 (+) False XLOC_020048
TCONS_00042018 lncRNA downstream 267585 2814463 ~ 2827856 (+) True XLOC_020050
TCONS_00042019 lncRNA downstream 375273 2922151 ~ 2927616 (+) True XLOC_020054
TCONS_00041859 lncRNA downstream 563158 3110036 ~ 3110513 (+) True XLOC_020058
TCONS_00039971 mRNA upstream 7395 2533514 ~ 2538691 (+) True XLOC_020032
TCONS_00039970 mRNA upstream 16103 2524615 ~ 2529983 (+) True XLOC_020031
TCONS_00039966 mRNA upstream 24230 2510828 ~ 2521856 (+) False XLOC_020030
TCONS_00039968 mRNA upstream 24235 2511045 ~ 2521851 (+) False XLOC_020030
TCONS_00039969 mRNA upstream 24614 2512154 ~ 2521472 (+) True XLOC_020030
TCONS_00039972 mRNA downstream 2166 2549044 ~ 2554837 (+) False XLOC_020034
TCONS_00039973 mRNA downstream 2953 2549831 ~ 2558579 (+) True XLOC_020034
TCONS_00039974 mRNA downstream 15223 2562101 ~ 2676627 (+) True XLOC_020035
TCONS_00039975 mRNA downstream 27887 2574765 ~ 2580575 (+) True XLOC_020036
TCONS_00039976 mRNA downstream 52120 2598998 ~ 2604255 (+) False XLOC_020037
TCONS_00039952 other upstream 156835 2385384 ~ 2389251 (+) True XLOC_020009
TCONS_00039951 other upstream 160119 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039942 other upstream 210057 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00039935 other upstream 271352 2269395 ~ 2274734 (+) False XLOC_020000
TCONS_00039929 other upstream 304309 2239274 ~ 2241777 (+) False XLOC_020014
TCONS_00039978 other downstream 84740 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00040015 other downstream 684734 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00040020 other downstream 828384 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040021 other downstream 837854 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040022 other downstream 1213879 3760757 ~ 3760871 (+) True XLOC_020070

Expression Profile

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