XLOC_020052 (si:dkey-20i20.8)


Basic Information

Item Value
gene id XLOC_020052
gene name si:dkey-20i20.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2830703 ~ 2838356 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039995
gctCGTCCTCCTTCAGTTCAGCTGTAAATACTGGAATATTCCCATCAGTCTACAAGTAAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCtgcaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagAtgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcaggtcaaaagtgaagaaaaaacccAATCAGAGACTGAACAAAGTATTTCAGTGAAAGCAACAGCGGTAAATAGTttgacctgcactcagtgtggaaagagtttcacccGCAAAAGCGGTCTCAAtgatcacatgaggatccacactggagagaaacctttcaaGTGTCCACACTGCGACTGGAGATTTAATAGCTTAAGAAACCTCAAATCACACATAAGgctccacactggagagaaacctcaCCAGTGTTCACACTGCAGCAAGAGATTCAATCATTCGGGACAGCTAAAATCACACttgaggatccacaccggagagaaacctttTGAGTGTTCACACTGCGGCAAGCGATTCAGTGTTTCAAAAAACATGAAAGCACATGAGAGAAttcacactgaagagaaaccgTATCACTGCACTGCTTGTGGAATGACATTCTCATATTTGTCTTctctacaaaaacacacactaaacTGTCAGA
>TCONS_00039996
atgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagAtgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcaggtcaaaagtgaagaaaaaacccAATCAGAGACTGAACAAAGTATTTCAGTGAAAGCAACAGCGGTAAATAGTttgacctgcactcagtgtggaaagagtttcacccGCAAAAGCGGTCTCAAtgatcacatgaggatccacactggagagaaacctttcaaGTGTCCACACTGCGACTGGAGATTTAATAGCTTAAGAAACCTCAAATCACACATAAGgctccacactggagagaaacctcaCCAGTGTTCACACTGCAGCAAGAGATTCAATCATTCGGGACAGCTAAAATCACACttgaggatccacaccggagagaaacctttTGAGTGTTCACACTGCGGCAAGCGATTCAGTGTTTCAAAAAACATGAAAGCACATGAGAGAAttcacactgaagagaaaccgTATCACTGCACTGCTTGTGGAATGACATTCTCATATTTGTCTTctctacaaaaacacacactaaacTGTCAGAATGTGACggtgaaggaggagagtgaagaactgaATGAAGATgtcaaaagtgaagaaaaaacccAATCAGAGACTGAACATAGTATTTCAGTGAAAGGAACAGCAGTAAATAGTTggacctgcactcagtgtggaaagagtttgagCTGCAAAAGCGCTCTCAAtactcacatgaggatccacactggagagaaaccttaccagTGTTCGCACTGCGGCAAGAGATTCAGTAATTCAGCATATCTGAAATCACACAAGAGGAttcacactgaagagaaaccttaccagtgttcacactgcgacaagagattcagtttTTCACAAAACCTGAAGACACACttgaggactcacactggagagaaaccgtatcaCTGCACTgcttgtgggaagagtttcagacataTGTCttctctacaaacacacacaagaaaccaTCACAATGTGATGGTGGAGGGGAGCGAAGATaaggagaaacatcatgtcacTAGTAAACAAAAAACTTTCAACTGcactgagtgtggaaagagttttaagcgcAAATACCATCTGATTTTTCACTTGAAGATCCACAGTGGAGAGAatccttacaagtgttgttcacactgcgacaagagattccgCTGTACAAATGTCAGAAAAGCAcatgagatgattcacactggagaggaactttacaagtgttcacactgcaacaaAACGTTCAGATATTCAGGACTTCTGAAAGTACATGAGAGGACTCACACCGGAGaaaaaccttacaagtgttcacactgcgagaaGAGATTCCGCAGTTCAAGTGGCAAAAAAGTacatgagaggactcacactggagagaaacctttccCGTGTTCACGCTGCAAGAAGCGATTCCGTGACTCCAGACAATTGATTAAACACGAAAgggttcacaccggagagaaaccgtatcCCTGCAATGCTTGTGGGAAGAGATTCAGACAATCATCTACTCTACGAGCACACACAGTAAACATTCACAACGTGAAGGAGAAGATGGACAACCATAGCATCCACACAACAGAGAAACTACATCTGTGTTCTGAGTGCGGAAAGAGTTTTGCAACACAGTCATATTTAAATGCACATCAGAAGATCCACtttggagagaaaccattcacatgcactcagtgtgggaggagtttcagaTATTCATCACAACTGAATGAACACATGatgacccacactggagagaagccacaCGAGTGTGATCAATGCGGAAAAAGATTTTTGAAGGCTTCAAACCTGAAGGTCCATTTTGGAGTtcatacaaaggagaagccttatCCGTGTCCTGTGTGTGGAAAAATGTTTGCACGTCCGTCACTTGTAAAAGAACATGAGCAGATCCACATTGGTGTTAAAAAGTATCAGTGCCTCGTGTGTGAAAAGAGCTTTCTTAGACCTGGAGCATTGAAACAGCACCtgaagattcacactggagagagaccacacaaatgtgatcaatgcggcaGAGCGTTTGTGAGGTCTGCACAACTAAAGTGCCATCTTAAAGTTCATGCAAAGGAGACACAGTCAGTTCTTAGATAG

Function

symbol description
si:dkey-20i20.8 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000071714

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039995 False 715 mRNA 0.42 2 2830703 2831938
TCONS_00039996 True 2151 mRNA 0.43 6 2830832 2838356

Neighbor

gene id symbol gene type direction distance location
XLOC_020050 NA coding upstream 2847 2814463 ~ 2827856 (+)
XLOC_020051 si:dkey-20i20.3 coding upstream 8682 2819613 ~ 2822021 (+)
XLOC_020049 si:dkey-20i20.7 coding upstream 23904 2801464 ~ 2806799 (+)
XLOC_020048 NA coding upstream 35252 2792575 ~ 2795451 (+)
XLOC_020047 si:dkey-20i20.9 coding upstream 48226 2778600 ~ 2782477 (+)
XLOC_020053 si:dkey-20i20.2 coding downstream 21904 2860260 ~ 2864139 (+)
XLOC_020054 NA coding downstream 83795 2922151 ~ 2927616 (+)
XLOC_020055 cep19 coding downstream 99129 2937485 ~ 2942954 (+)
XLOC_020056 impact coding downstream 121523 2959879 ~ 3026838 (+)
XLOC_020057 LO017843.1 coding downstream 207139 3045495 ~ 3078347 (+)
XLOC_020038 CU896630.1 non-coding upstream 198965 2631618 ~ 2631738 (+)
XLOC_020033 NA non-coding upstream 283825 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 591610 2237152 ~ 2239093 (+)
XLOC_020058 NA non-coding downstream 271680 3110036 ~ 3110513 (+)
XLOC_020061 NA non-coding downstream 380647 3219003 ~ 3222417 (+)
XLOC_020067 NA non-coding downstream 490696 3329052 ~ 3335881 (+)
XLOC_020068 CU652528.1 non-coding downstream 536906 3375262 ~ 3376270 (+)

Expression


Co-expression Network