XLOC_020049 (si:dkey-20i20.7)


Basic Information

Item Value
gene id XLOC_020049
gene name si:dkey-20i20.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2801464 ~ 2806799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039993
TTGCTCCCGCCTCGCCGTGATGACGTCAGCACATACGCGTTCattcagcgtcgagtcttcagagctgagcTCTGCCGCCATCAGTGAAAGCCAAAGACAGAGATTATTGatggacagtgagaagatgagtgatccagaaccctgcaaaATCAAACAGGAAGacactgaagaactaatagAtgtgaaggaggagagtgaagaactgaatgaagatgaggagaaacatcagATCAAAAGTGAAGATAAAACCCAATCAGAGACTGAAAGTATTTCAGAGAAAGCAACAGCGGTAAATAGTttgacctgcactcagtgtggaaagagtttcacccGCAAAAGCGGTCTCAAtgatcacatgaggatccacactggagagaaacctttcaaGTGTCCACACTGCGAGAAGAGATTTAATAATTTAAGAAACCTCAAATCACACATAAGGCTCCACACTGGCGAGAGACCTTACCAGTGTTCACACTGCAGCAAGAGATTCAATCATCCAGGAGTCCTAAAAtcacacatgaggatccacaccggagagaaaccttacaagtgttcacactgcggcaAGAGATTCAGTGGTTCAGCATGCATGAAAGcacatgagaggactcacactgaagagaaaccgTATCACTGCACTGCTTGTTGGAAGAGATTCTCATATTCATCTTCTCTACGACAACACTCACTAAACTGTCAGAatgtgatggtgaaggaggagagtgaaaAACTGaatgaagatgaggagaaacatcaaGAAAAACCCCAATCAGAGACTGAAAGTATTTCAGTGAAAGGAACAGCAGTAAATAGtctcacctgcactcagtgtggaaagagtttcagctgcAAAAGCATTCTCAAtaatcacatgaggatccacactggagaga

Function

symbol description
si:dkey-20i20.7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039993 True 899 mRNA 0.44 4 2801464 2806799

Neighbor

gene id symbol gene type direction distance location
XLOC_020048 NA coding upstream 6013 2792575 ~ 2795451 (+)
XLOC_020047 si:dkey-20i20.9 coding upstream 18987 2778600 ~ 2782477 (+)
XLOC_020046 si:dkey-20i20.10 coding upstream 27656 2769236 ~ 2773808 (+)
XLOC_020045 si:dkey-20i20.11 coding upstream 42715 2751887 ~ 2758749 (+)
XLOC_020044 znf1163 coding upstream 82551 2715815 ~ 2718913 (+)
XLOC_020050 NA coding downstream 7664 2814463 ~ 2827856 (+)
XLOC_020051 si:dkey-20i20.3 coding downstream 12814 2819613 ~ 2822021 (+)
XLOC_020052 si:dkey-20i20.8 coding downstream 23904 2830703 ~ 2838356 (+)
XLOC_020053 si:dkey-20i20.2 coding downstream 53461 2860260 ~ 2864139 (+)
XLOC_020054 NA coding downstream 115352 2922151 ~ 2927616 (+)
XLOC_020038 CU896630.1 non-coding upstream 169726 2631618 ~ 2631738 (+)
XLOC_020033 NA non-coding upstream 254586 2546086 ~ 2546878 (+)
XLOC_020013 NA non-coding upstream 562371 2237152 ~ 2239093 (+)
XLOC_020007 BX640537.1 non-coding upstream 623001 2175857 ~ 2178463 (+)
XLOC_020058 NA non-coding downstream 303237 3110036 ~ 3110513 (+)
XLOC_020061 NA non-coding downstream 412204 3219003 ~ 3222417 (+)
XLOC_020067 NA non-coding downstream 522253 3329052 ~ 3335881 (+)

Expression


Co-expression Network