RNA id: TCONS_00040016


Basic Information

Item Value
RNA id TCONS_00040016
length 1570
RNA type mRNA
GC content 0.41
exon number 1
gene id XLOC_020063
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3232925 ~ 3234494 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacctggaaatgttgcctggacctcagaaatataggctatataataatataataaatattattatatgccatattcatatataaatcatttttgatacattttgaaatatatgcacAGTAGCATGTACATGtaacatatttgattcctccgcgtaccactagaaggaaacccgcgttaacattaacattatttaGGTTAAGGTTAGTTTTTATATCCATCTGTCTCTCCATccctccgtccatccatccatccatccatccatccatctgtctctccatctatctatctatctgtctatccatccctccgtccatcatctatctacccatctatctgtctattcatccgtctctccatctatctatccatccatccatccatccatccatccatccatctgtctctccatctatctatctatctgtttatccatccatccgtccatcatctatctacccatctatctgtctattcatccatctatccgtctatccatccgtccatccatccgtctctccatctatctatccatctgtctctccgtccatccatccatccatccatccgtctctccatctatctatccatccctccgtccatccatccatccgtcactccatctatctatctgtctatccgtccatccgtccatcatctatctatccatctatctgtctatccatccgtccgtccatctatctatctatccatccatccatccctctatccatctatctatccatccatccgtctctcctactatctatccatctatccgtctatccatccgtccgtccatccatccatccatccgtctctccatctatctatccatccgtccatccatccatccatctctcctactatctatccatctatctgtctatccatccatccgtccatccatccatcaatctgtctatccatctatctgtctatccatccgtccatccatccatccatccatctctcctactatctatccatctatctgtctctccatccgtccatccatccatcaatctgcctctccatctatctatccatgcatccatccatccatccatccatctgtttctcctactatctatccatctatctgtctgtccgtccatccatccaaccatccatccgtctctccatctatctgtccatccatacatccatccattcgtctatccatctgtctatctatctgcctgtccgtccgtccatctttTCATATTTTTGACATTAGATGCAACAACTTGACCAATTTTACAAATCAACTTTATTACAATTCAAAATTATTTCAGAAATtcactgtttttacatttttaactgcATCACAGCAGTCGCTGCGTATATTTACACCAATACTCCgactttaatatgattaagacaatactctgattaagagtcgaccttGTAAACAGCGATTTATGATGACCTTAAACTGACTAAAGTCTTAAACAAACTGcacacgtcttaattccatttctgtgaAGTGTTCTTATCTTAGCCACATTATTGAAGCGCAGTACAGACATGAAAAAGACATGATTAAAGAactttaatcaaactattaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041860 lncRNA upstream 10508 3219003 ~ 3222417 (+) True XLOC_020061
TCONS_00041859 lncRNA upstream 122412 3110036 ~ 3110513 (+) True XLOC_020058
TCONS_00042019 lncRNA upstream 305309 2922151 ~ 2927616 (+) True XLOC_020054
TCONS_00042018 lncRNA upstream 405069 2814463 ~ 2827856 (+) True XLOC_020050
TCONS_00042017 lncRNA upstream 439364 2792575 ~ 2793561 (+) False XLOC_020048
TCONS_00042020 lncRNA downstream 94558 3329052 ~ 3335881 (+) False XLOC_020067
TCONS_00042021 lncRNA downstream 99009 3333503 ~ 3335881 (+) True XLOC_020067
TCONS_00042022 lncRNA downstream 830107 4064601 ~ 4099599 (+) False XLOC_020072
TCONS_00042023 lncRNA downstream 830107 4064601 ~ 4167110 (+) False XLOC_020072
TCONS_00041861 lncRNA downstream 849102 4083596 ~ 4085474 (+) True XLOC_020073
TCONS_00040014 mRNA upstream 533 3223489 ~ 3232392 (+) False XLOC_020062
TCONS_00040012 mRNA upstream 18381 3184500 ~ 3214544 (+) False XLOC_020060
TCONS_00040013 mRNA upstream 20935 3184561 ~ 3211990 (+) True XLOC_020060
TCONS_00040010 mRNA upstream 73469 3153876 ~ 3159456 (+) False XLOC_020059
TCONS_00040011 mRNA upstream 73742 3156386 ~ 3159183 (+) True XLOC_020059
TCONS_00040017 mRNA downstream 3980 3238474 ~ 3239834 (+) True XLOC_020064
TCONS_00040018 mRNA downstream 10456 3244950 ~ 3271707 (+) True XLOC_020065
TCONS_00040019 mRNA downstream 69177 3303671 ~ 3328241 (+) True XLOC_020066
TCONS_00040024 mRNA downstream 679824 3914318 ~ 3929075 (+) False XLOC_020071
TCONS_00040023 mRNA downstream 679824 3914318 ~ 3929075 (+) True XLOC_020071
TCONS_00040015 other upstream 291 3231612 ~ 3232634 (+) True XLOC_020062
TCONS_00039978 other upstream 601187 2631618 ~ 2631738 (+) True XLOC_020038
TCONS_00039952 other upstream 843674 2385384 ~ 2389251 (+) True XLOC_020009
TCONS_00039951 other upstream 846958 2384327 ~ 2385967 (+) False XLOC_020009
TCONS_00039942 other upstream 896896 2328299 ~ 2336029 (+) False XLOC_020009
TCONS_00040020 other downstream 140768 3375262 ~ 3376270 (+) True XLOC_020068
TCONS_00040021 other downstream 150238 3384732 ~ 3388004 (+) True XLOC_020069
TCONS_00040022 other downstream 526263 3760757 ~ 3760871 (+) True XLOC_020070
TCONS_00040031 other downstream 1443373 4677867 ~ 4677981 (+) True XLOC_020077
TCONS_00040044 other downstream 1891404 5125898 ~ 5130024 (+) True XLOC_020084

Expression Profile

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