RNA id: TU185997


Basic Information

Item Value
RNA id TU185997
length 95
lncRNA type read_through
GC content 0.39
exon number 1
gene id G163712
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10237639 ~ 10237733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATGATGCAGCGGAATGAAGCAAGAGACAAACTTGACTGAGACTGGGAGAAATAACCTCAATTTTTGTGTTATTGTGTGCGTCTATGACTGATTGTGTGTTTGGTGATTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTTTATACACTGATCTTACTGAAATACATGAAGATGACGACATACTGTGGAAATATGGAGCTGAAAACTCTTCTCCACATATGATGGTACTGATGGGAGATTCAGAGACAGACTGAAGCTGGACGATCAAACTGGATCTCTGACCATCACAAACACCAGAACTGAACATACTGGAGTTTATGAAGTAAAGATAAGTGGACTGAAACTGACATCAAAAACATTCAGTGTTTCTGTCTATGGTGAAAGCCTTTTCTTCTCTGAATATTATGTTGTGTTGCTCTCAAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186069 lncRNA downstream 9396 9726605 ~ 9847985 (-) True G163784
TU185969 lncRNA downstream 51500 9733712 ~ 9805881 (-) True G163684
TU186484 lncRNA downstream 58430 9775838 ~ 9798951 (-) True G164150
TU186485 lncRNA downstream 58696 9795704 ~ 9798685 (-) True G164151
TU186483 lncRNA downstream 101037 9755879 ~ 9756344 (-) True G164149
TU186001 lncRNA upstream 47537 10298980 ~ 10299177 (-) True CI01000030_10297963_10300335
TU186034 lncRNA upstream 59723 10490782 ~ 10490986 (-) True G163749
TU186060 lncRNA upstream 67533 10305266 ~ 10340330 (-) True G163775
TU185982 lncRNA upstream 77414 10315147 ~ 10316951 (-) True G163697
TU186606 lncRNA upstream 129715 10367448 ~ 10384031 (-) True G164258
CI01000030_09828173_09846949.mRNA mRNA downstream 10333 9828058 ~ 9847048 (-) True CI01000030_09828173_09846949
CI01000030_09819566_09824633.mRNA mRNA downstream 30935 9819202 ~ 9826446 (-) True CI01000030_09819566_09824633
CI01000030_09812332_09814520.mRNA mRNA downstream 42662 9812192 ~ 9814719 (-) True CI01000030_09812332_09814520
CI01000030_09791043_09795157.mRNA mRNA downstream 62090 9790265 ~ 9795291 (-) True CI01000030_09791043_09795157
CI01000030_09768958_09783689.mRNA mRNA downstream 73588 9768705 ~ 9783793 (-) True CI01000030_09768958_09783689
CI01000030_10280046_10287211.mRNA mRNA upstream 42245 10279978 ~ 10287250 (-) False CI01000030_10280046_10287211
CI01000030_10297963_10300335.mRNA mRNA upstream 59739 10297472 ~ 10300659 (-) False CI01000030_10297963_10300335
CI01000030_10313822_10320039.mRNA mRNA upstream 75990 10313723 ~ 10320093 (-) False CI01000030_10313822_10320039
CI01000030_10321881_10332415.mRNA mRNA upstream 84138 10321871 ~ 10333450 (-) True CI01000030_10321881_10332415
CI01000030_10343879_10366274.mRNA mRNA upstream 106132 10343865 ~ 10366508 (-) False CI01000030_10343879_10366274
TU186385 other downstream 381117 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 555232 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 923399 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1664895 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 2064999 7792243 ~ 7792382 (-) True G163366
TU186048 other upstream 47996 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 109627 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 127684 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 1256605 11512598 ~ 11512682 (-) True G164443

Expression Profile